Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TRIM60P18-201ENST00000441518 828 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AL035090.1-201ENST00000454835 332 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD3P31249 AC005229.2-201ENST00000456995 399 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXD3P31249 AC010307.1-201ENST00000467206 836 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD3P31249 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD3P31249 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD3P31249 AC004069.2-201ENST00000505438 1114 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 HMGB1P44-201ENST00000508597 572 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 ATP1B1P1-201ENST00000509767 915 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AF213884.2-201ENST00000510417 903 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD3P31249 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD3P31249 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD3P31249 COX6B1P6-201ENST00000522347 255 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 SMARCE1P4-201ENST00000523647 241 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 HMGB1P40-201ENST00000525121 540 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC107918.3-201ENST00000533272 382 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD3P31249 TRAV15-201ENST00000556680 249 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC027807.1-201ENST00000559921 996 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 MIR3611-201ENST00000584484 83 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC128687.1-201ENST00000605304 619 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC005332.10-201ENST00000612725 619 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC100827.5-201ENST00000615883 426 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC073968.1-201ENST00000618594 637 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC124312.6-202ENST00000623624 418 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
HOXD3P31249 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXD3P31249 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
HOXD3P31249 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.18□□□□□ -1.74
HOXD3P31249 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 ASNSP1-204ENST00000641977 1664 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
HOXD3P31249 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXD3P31249 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.18□□□□□ -1.74
HOXD3P31249 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
HOXD3P31249 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 AC046144.1-201ENST00000478559 1853 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
HOXD3P31249 OR9K1P-202ENST00000641111 3217 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXD3P31249 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 AC114774.1-201ENST00000507410 1770 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 ABCC13-202ENST00000463099 3842 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC079097.1-201ENST00000512187 1399 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AP005435.3-201ENST00000531260 3198 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
HOXD3P31249 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
HOXD3P31249 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 MIR133B-201ENST00000362210 119 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 RNA5SP183-201ENST00000362452 119 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 RNU1-43P-201ENST00000365052 165 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 SNORA16A-201ENST00000384342 137 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 U3.28-201ENST00000391249 210 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 CYCSP45-201ENST00000402289 315 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AL133388.1-201ENST00000404509 287 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 RNU6-272P-201ENST00000411028 104 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AF274854.1-201ENST00000413236 615 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AL139128.1-201ENST00000413921 941 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXD3P31249 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 AC007559.1-201ENST00000428736 355 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC005033.1-201ENST00000428904 813 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXD3P31249 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 RPS24P8-201ENST00000431490 402 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 RPS24P1-201ENST00000438550 371 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC073465.2-201ENST00000440938 498 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 MTND1P30-201ENST00000441241 901 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 RPS11P7-201ENST00000442125 465 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC004865.1-201ENST00000442276 1003 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXD3P31249 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 Z80107.2-201ENST00000445127 392 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXD3P31249 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 DNAJB5P1-201ENST00000454004 806 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms