Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 OR56B2P-201ENST00000317102 954 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 RPL32P3-201ENST00000359025 275 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A1P12109 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
COL6A1P12109 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL6A1P12109 MIR105-1-201ENST00000385222 81 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL6A1P12109 U3.28-201ENST00000391249 210 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 MIR1182-201ENST00000408363 97 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A1P12109 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC5.88□□□□□ -1.47
COL6A1P12109 AL158073.1-201ENST00000426848 1104 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A1P12109 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 PTMAP3-201ENST00000447474 330 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 RPL23AP72-201ENST00000492447 435 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AC005912.1-201ENST00000495392 255 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AC073358.1-201ENST00000505671 684 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A1P12109 HNRNPKP5-201ENST00000515300 253 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.88□□□□□ -1.47
COL6A1P12109 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A1P12109 AP002963.1-201ENST00000530590 184 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 TOMM20P2-201ENST00000540082 421 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AC122688.1-201ENST00000541494 223 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A1P12109 AC007954.1-201ENST00000554198 494 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A1P12109 AC136619.2-201ENST00000563361 631 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A1P12109 AC087683.1-201ENST00000591187 441 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.88□□□□□ -1.47
COL6A1P12109 AC097505.1-201ENST00000610199 565 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.88□□□□□ -1.47
COL6A1P12109 FRG1HP-204ENST00000617940 757 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
COL6A1P12109 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
COL6A1P12109 AP000473.2-201ENST00000602659 1537 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A1P12109 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A1P12109 AL137100.1-201ENST00000556703 1620 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A1P12109 AC012020.1-201ENST00000624541 1728 ntBASIC5.88□□□□□ -1.47
COL6A1P12109 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
COL6A1P12109 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A1P12109 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL6A1P12109 AL451142.2-201ENST00000429076 2090 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 SDAD1P1-202ENST00000524156 2051 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 AC133552.1-201ENST00000569988 4007 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL6A1P12109 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
COL6A1P12109 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL6A1P12109 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL6A1P12109 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL6A1P12109 RN7SKP224-201ENST00000364140 325 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL6A1P12109 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A1P12109 RNU6-1200P-201ENST00000384162 107 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 Y_RNA.516-201ENST00000384541 124 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 RNU6-146P-201ENST00000384602 108 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 GLULP6-201ENST00000399502 913 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.87□□□□□ -1.47
COL6A1P12109 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 AL133264.1-201ENST00000407157 562 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 RN7SKP142-201ENST00000411236 328 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 OR5AW1P-201ENST00000426334 1006 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 MED14P1-201ENST00000430517 648 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.87□□□□□ -1.47
COL6A1P12109 RPS24P8-201ENST00000431490 402 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A1P12109 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AL590103.1-201ENST00000434488 307 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 BX679664.2-201ENST00000439282 283 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.87□□□□□ -1.47
COL6A1P12109 AC012512.1-201ENST00000446594 718 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A1P12109 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.87□□□□□ -1.47
COL6A1P12109 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.87□□□□□ -1.47
COL6A1P12109 RPL21P134-201ENST00000453468 483 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL6A1P12109 CFTRP1-201ENST00000456646 183 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 CDC42P1-201ENST00000456658 548 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AP000797.2-201ENST00000475768 606 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 MTAPP1-201ENST00000489154 819 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 RPS17P5-201ENST00000498293 408 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AC104685.1-201ENST00000502445 371 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 AC104090.1-201ENST00000506341 1171 ntBASIC5.87□□□□□ -1.47
COL6A1P12109 CBX3P3-201ENST00000508108 532 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms