Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 P2RY10P2-201ENST00000416730 913 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.03□□□□□ -1.44
HMGB1P09429 AC104333.2-201ENST00000422630 192 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 AC245047.2-201ENST00000441060 530 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 AURKAPS1-201ENST00000451805 1212 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 AL389915.2-201ENST00000454576 441 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 FGF7P3-201ENST00000454645 303 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 RN7SL172P-201ENST00000460535 303 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 COX6B1P2-201ENST00000489624 230 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 AC073073.1-201ENST00000493920 463 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 AC005921.1-201ENST00000510589 286 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.03□□□□□ -1.44
HMGB1P09429 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC6.03□□□□□ -1.44
HMGB1P09429 SULT1C2P1-202ENST00000562418 459 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
HMGB1P09429 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC6.03□□□□□ -1.44
HMGB1P09429 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
HMGB1P09429 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
HMGB1P09429 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HMGB1P09429 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
HMGB1P09429 MAPK6PS3-201ENST00000403865 2162 ntBASIC6.03□□□□□ -1.44
HMGB1P09429 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC6.03□□□□□ -1.44
HMGB1P09429 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
HMGB1P09429 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
HMGB1P09429 AL645568.2-201ENST00000432815 1337 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HMGB1P09429 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HMGB1P09429 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HMGB1P09429 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
HMGB1P09429 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HMGB1P09429 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.02□□□□□ -1.45
HMGB1P09429 RNU6-657P-201ENST00000383904 107 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 RNU6-761P-201ENST00000384148 107 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 RNU6-837P-201ENST00000391056 108 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 RN7SKP114-201ENST00000410327 279 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC6.02□□□□□ -1.45
HMGB1P09429 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC6.02□□□□□ -1.45
HMGB1P09429 AC079355.1-201ENST00000421770 223 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC6.02□□□□□ -1.45
HMGB1P09429 DDX39BP1-205ENST00000422507 192 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC6.02□□□□□ -1.45
HMGB1P09429 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC6.02□□□□□ -1.45
HMGB1P09429 USP12PY-201ENST00000427677 1064 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC6.02□□□□□ -1.45
HMGB1P09429 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 RPL35AP21-201ENST00000437667 333 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 AC127537.2-201ENST00000439258 465 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 RPL7AP61-201ENST00000443410 636 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 AC097484.1-201ENST00000471148 389 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 OR5H5P-201ENST00000503164 928 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 SNRPCP2-201ENST00000504370 475 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.02□□□□□ -1.45
HMGB1P09429 AC105031.1-201ENST00000518550 476 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 OSBPL9P2-201ENST00000526582 1228 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC6.02□□□□□ -1.45
HMGB1P09429 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC6.02□□□□□ -1.45
HMGB1P09429 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HMGB1P09429 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.02□□□□□ -1.45
HMGB1P09429 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC6.02□□□□□ -1.45
HMGB1P09429 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.02□□□□□ -1.45
HMGB1P09429 AC011447.4-201ENST00000587562 111 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 DPRXP5-201ENST00000604662 539 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 AC022467.1-201ENST00000614738 749 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 AL445984.1-201ENST00000637834 659 ntBASIC6.02□□□□□ -1.45
HMGB1P09429 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
HMGB1P09429 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HMGB1P09429 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.02□□□□□ -1.45
HMGB1P09429 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HMGB1P09429 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HMGB1P09429 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HMGB1P09429 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HMGB1P09429 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
HMGB1P09429 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
HMGB1P09429 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HMGB1P09429 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HMGB1P09429 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.01□□□□□ -1.45
HMGB1P09429 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HMGB1P09429 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
HMGB1P09429 RNU6-335P-201ENST00000364563 113 ntBASIC6.01□□□□□ -1.45
HMGB1P09429 RNA5SP189-201ENST00000364920 115 ntBASIC6.01□□□□□ -1.45
HMGB1P09429 MIR3074-201ENST00000384885 81 ntBASIC6.01□□□□□ -1.45
HMGB1P09429 MIR223-201ENST00000385204 110 ntBASIC6.01□□□□□ -1.45
HMGB1P09429 MTND4LP20-201ENST00000402379 270 ntBASIC6.01□□□□□ -1.45
HMGB1P09429 AL049697.2-201ENST00000403708 294 ntBASIC6.01□□□□□ -1.45
HMGB1P09429 OR4K6P-201ENST00000416478 897 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms