Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 LINC01355-201ENST00000566551 5444 ntBASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 HSPA8P17-201ENST00000427029 1382 ntBASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 BTBD10P1-201ENST00000549824 1352 ntBASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.24□□□□□ -1.73
SMIM28A0A1B0GU29 AC011266.1-201ENST00000624119 3569 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 RNA5SP105-201ENST00000391123 113 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 SNORA48.7-201ENST00000391302 135 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AL445584.1-201ENST00000431451 330 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AC007389.2-201ENST00000434630 306 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 MRPS33P4-201ENST00000434892 317 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 ARL5AP3-201ENST00000439327 386 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 RPL7L1P1-201ENST00000448259 785 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 PCNAP1-201ENST00000505363 709 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 RNU6-491P-201ENST00000516099 110 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 OR5M7P-201ENST00000526140 972 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AC074029.2-201ENST00000551045 634 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 SULT1C2P2-201ENST00000562517 294 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 KATNBL1P1-201ENST00000605192 748 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 AP002967.1-201ENST00000624203 539 ntBASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.23□□□□□ -1.73
SMIM28A0A1B0GU29 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 RNA5SP97-201ENST00000365006 84 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 SNORA3.3-201ENST00000408712 125 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 MTCYBP7-201ENST00000419540 1134 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 HMGB1P37-201ENST00000439613 609 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 Z95327.1-201ENST00000446082 482 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 BUD31P2-201ENST00000449374 300 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 RPL21P11-201ENST00000461458 483 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC093853.1-201ENST00000515689 483 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 HMGB1P23-201ENST00000518743 568 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC090312.1-201ENST00000580637 348 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC096553.1-201ENST00000605169 829 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC023813.4-201ENST00000607580 580 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC026368.1-201ENST00000614934 690 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AL356274.1-201ENST00000617064 410 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 LINC00216-201ENST00000623548 1126 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC021242.1-201ENST00000507315 2035 ntBASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.22□□□□□ -1.73
SMIM28A0A1B0GU29 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
SMIM28A0A1B0GU29 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
SMIM28A0A1B0GU29 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
SMIM28A0A1B0GU29 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
SMIM28A0A1B0GU29 NEAT1-202ENST00000501122 22743 ntBASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 RNU4-44P-201ENST00000363050 141 ntBASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
SMIM28A0A1B0GU29 U1.1-201ENST00000384101 164 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 223.2 ms