Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC091860.1-201ENST00000505723 432 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC008837.1-201ENST00000511513 412 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC021146.3-201ENST00000511911 260 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 BTF3P13-201ENST00000513224 490 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 IGKV2-36-201ENST00000519999 223 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 OR8G5-201ENST00000524943 1041 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 OR10V3P-201ENST00000525712 725 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 OR5D15P-201ENST00000531671 942 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC139103.1-201ENST00000534696 1030 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 MIR4480-201ENST00000582492 71 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 RPP40P2-201ENST00000603596 712 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 ELOCP34-201ENST00000604436 327 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC112220.2-201ENST00000605513 533 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC009974.1-201ENST00000608881 455 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 AC091953.3-201ENST00000623220 236 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 OR2L1P-202ENST00000641567 1023 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
NKX3-1Q99801 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
NKX3-1Q99801 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 ASNSP1-201ENST00000518311 1939 ntBASIC4.03□□□□□ -1.76
NKX3-1Q99801 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.03□□□□□ -1.76
NKX3-1Q99801 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
NKX3-1Q99801 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC007390.2-201ENST00000606229 3803 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 RN7SKP104-201ENST00000362605 328 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 RNU6-1339P-201ENST00000363574 91 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 RNA5SP151-201ENST00000365632 117 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 RPS24P8-201ENST00000431490 402 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 PPIAP13-201ENST00000434706 478 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC092809.1-201ENST00000441469 474 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 YWHAQP9-201ENST00000445891 512 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AL031313.1-201ENST00000448435 256 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 RPL6P9-201ENST00000466502 859 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC231760.1-201ENST00000498002 260 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC023050.1-201ENST00000498198 304 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC119751.1-201ENST00000513357 765 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 RNU6-416P-201ENST00000516265 103 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 GSTP1P1-201ENST00000548078 319 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AL132857.1-201ENST00000555180 708 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AL031320.1-201ENST00000604177 357 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC133552.5-201ENST00000604266 540 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 FAM25E-202ENST00000608562 189 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC243654.2-201ENST00000612843 443 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AL035461.2-201ENST00000619201 524 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AL442639.1-201ENST00000625030 1899 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC022893.2-201ENST00000564832 3296 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NKX3-1Q99801 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.02□□□□□ -1.77
NKX3-1Q99801 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.02□□□□□ -1.77
NKX3-1Q99801 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 314.9 ms