Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC120057.2-201ENST00000571520 271 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC3.55□□□□□ -1.84
CHD3Q12873 AL359715.5-201ENST00000623431 443 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CHD3Q12873 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CHD3Q12873 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CHD3Q12873 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
CHD3Q12873 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.55□□□□□ -1.84
CHD3Q12873 AC074029.4-201ENST00000624796 1859 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 HMGB3P19-201ENST00000403971 560 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 RN7SKP159-201ENST00000410657 292 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.54□□□□□ -1.84
CHD3Q12873 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 SEPT14P1-201ENST00000458703 648 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 RPL23AP71-201ENST00000470966 469 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.54□□□□□ -1.84
CHD3Q12873 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.54□□□□□ -1.84
CHD3Q12873 AC012314.7-201ENST00000619693 93 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 AC138907.10-201ENST00000623708 983 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 HSPD1P11-201ENST00000508643 1702 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 OR4G1P-202ENST00000641173 1788 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 OR11H4-201ENST00000315409 1082 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 RNU1-15P-201ENST00000353977 144 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 MIR491-201ENST00000384877 84 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 AC026427.2-201ENST00000506228 536 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 AL592156.1-201ENST00000508758 304 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.54□□□□□ -1.84
CHD3Q12873 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.54□□□□□ -1.84
CHD3Q12873 SNORA51-201ENST00000606420 132 ntBASIC3.54□□□□□ -1.84
CHD3Q12873 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CHD3Q12873 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
CHD3Q12873 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CHD3Q12873 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
CHD3Q12873 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 RLIMP1-201ENST00000339626 1680 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.53□□□□□ -1.84
CHD3Q12873 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 NDUFB4P4-201ENST00000404822 243 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.53□□□□□ -1.84
CHD3Q12873 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.53□□□□□ -1.84
CHD3Q12873 HMGN2P31-201ENST00000432430 273 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 RPS11P1-201ENST00000451072 473 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 RPS26P15-201ENST00000488067 348 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.53□□□□□ -1.84
CHD3Q12873 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.53□□□□□ -1.84
CHD3Q12873 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.53□□□□□ -1.84
CHD3Q12873 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 AC008725.1-201ENST00000605123 2263 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.53□□□□□ -1.84
CHD3Q12873 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
CHD3Q12873 FAM35DP-201ENST00000323387 2712 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC3.53□□□□□ -1.84
CHD3Q12873 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
CHD3Q12873 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CHD3Q12873 MIR200C-201ENST00000384980 68 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 MTCO1P54-201ENST00000430139 712 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 RPL23AP89-201ENST00000439324 255 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AC006011.1-201ENST00000442758 349 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.53□□□□□ -1.84
CHD3Q12873 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.53□□□□□ -1.84
CHD3Q12873 AF131215.7-201ENST00000602443 707 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AL451086.1-201ENST00000605596 223 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AC012603.1-201ENST00000606424 528 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms