Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC005008.1-201ENST00000456151 612 ntBASIC6.25□□□□□ -1.41
CUX1P39880 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC6.25□□□□□ -1.41
CUX1P39880 RN7SL585P-201ENST00000470538 280 ntBASIC6.25□□□□□ -1.41
CUX1P39880 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC6.25□□□□□ -1.41
CUX1P39880 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC6.25□□□□□ -1.41
CUX1P39880 AC103843.2-201ENST00000530523 682 ntBASIC6.25□□□□□ -1.41
CUX1P39880 CASP1-216ENST00000534497 825 ntTSL 5 BASIC6.25□□□□□ -1.41
CUX1P39880 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CUX1P39880 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC6.25□□□□□ -1.41
CUX1P39880 GNRHR2P1-201ENST00000555315 631 ntBASIC6.25□□□□□ -1.41
CUX1P39880 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC6.25□□□□□ -1.41
CUX1P39880 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC6.25□□□□□ -1.41
CUX1P39880 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC6.25□□□□□ -1.41
CUX1P39880 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC6.24□□□□□ -1.41
CUX1P39880 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
CUX1P39880 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
CUX1P39880 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CUX1P39880 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC6.24□□□□□ -1.41
CUX1P39880 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
CUX1P39880 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC6.24□□□□□ -1.41
CUX1P39880 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CUX1P39880 RNU4-35P-201ENST00000362588 141 ntBASIC6.24□□□□□ -1.41
CUX1P39880 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CUX1P39880 AC010740.1-201ENST00000417035 684 ntBASIC6.24□□□□□ -1.41
CUX1P39880 OSTCP5-201ENST00000425293 453 ntBASIC6.24□□□□□ -1.41
CUX1P39880 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC6.24□□□□□ -1.41
CUX1P39880 RPL5P24-201ENST00000463742 885 ntBASIC6.24□□□□□ -1.41
CUX1P39880 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC6.24□□□□□ -1.41
CUX1P39880 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC6.24□□□□□ -1.41
CUX1P39880 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC6.24□□□□□ -1.41
CUX1P39880 AC090877.1-201ENST00000561418 344 ntBASIC6.24□□□□□ -1.41
CUX1P39880 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC6.24□□□□□ -1.41
CUX1P39880 YPEL5P2-201ENST00000605553 359 ntBASIC6.24□□□□□ -1.41
CUX1P39880 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
CUX1P39880 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 CD36-221ENST00000534394 1741 ntTSL 2 BASIC6.23□□□□□ -1.41
CUX1P39880 SYF2-202ENST00000354361 926 ntTSL 2 BASIC6.23□□□□□ -1.41
CUX1P39880 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 SNORA48.2-201ENST00000390926 124 ntBASIC6.23□□□□□ -1.41
CUX1P39880 HSFY4P-201ENST00000415994 1181 ntBASIC6.23□□□□□ -1.41
CUX1P39880 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC6.23□□□□□ -1.41
CUX1P39880 HLA-N-201ENST00000437516 135 ntBASIC6.23□□□□□ -1.41
CUX1P39880 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC6.23□□□□□ -1.41
CUX1P39880 AL645931.1-201ENST00000439737 410 ntBASIC6.23□□□□□ -1.41
CUX1P39880 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CUX1P39880 BTG4P1-201ENST00000510421 183 ntBASIC6.23□□□□□ -1.41
CUX1P39880 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC6.23□□□□□ -1.41
CUX1P39880 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC6.23□□□□□ -1.41
CUX1P39880 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC6.23□□□□□ -1.41
CUX1P39880 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
CUX1P39880 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CUX1P39880 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CUX1P39880 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC6.22□□□□□ -1.41
CUX1P39880 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CUX1P39880 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC6.22□□□□□ -1.41
CUX1P39880 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
CUX1P39880 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC6.22□□□□□ -1.41
CUX1P39880 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC6.22□□□□□ -1.41
CUX1P39880 OR51A6P-201ENST00000418680 1004 ntBASIC6.22□□□□□ -1.41
CUX1P39880 AC005019.1-201ENST00000436455 431 ntBASIC6.22□□□□□ -1.41
CUX1P39880 RN7SKP83-201ENST00000516512 178 ntBASIC6.22□□□□□ -1.41
CUX1P39880 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
CUX1P39880 IGKV2OR2-8-201ENST00000558710 300 ntBASIC6.22□□□□□ -1.41
CUX1P39880 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC6.22□□□□□ -1.41
CUX1P39880 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC6.22□□□□□ -1.41
CUX1P39880 AL390816.3-201ENST00000604527 1066 ntBASIC6.22□□□□□ -1.41
CUX1P39880 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CUX1P39880 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CUX1P39880 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CUX1P39880 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC6.22□□□□□ -1.41
CUX1P39880 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CUX1P39880 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.21□□□□□ -1.41
CUX1P39880 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
CUX1P39880 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC6.21□□□□□ -1.42
CUX1P39880 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC6.21□□□□□ -1.42
CUX1P39880 NACA-211ENST00000548563 827 ntTSL 5 BASIC6.21□□□□□ -1.42
CUX1P39880 AL591424.2-201ENST00000617023 128 ntBASIC6.21□□□□□ -1.42
CUX1P39880 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CUX1P39880 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
CUX1P39880 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CUX1P39880 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CUX1P39880 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CUX1P39880 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CUX1P39880 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CUX1P39880 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CUX1P39880 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CUX1P39880 RNA5SP50-201ENST00000363731 107 ntBASIC6.2□□□□□ -1.42
CUX1P39880 AC010285.3-201ENST00000511668 676 ntBASIC6.2□□□□□ -1.42
CUX1P39880 RNU2-27P-201ENST00000516185 142 ntBASIC6.2□□□□□ -1.42
CUX1P39880 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC6.2□□□□□ -1.42
CUX1P39880 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC6.2□□□□□ -1.42
CUX1P39880 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms