Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RN7SKP232-201ENST00000410170 290 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AL136133.1-201ENST00000413694 376 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 MRPS21P5-201ENST00000417885 231 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AC092634.6-201ENST00000418558 192 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.97□□□□□ -1.45
COL8A1P27658 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.97□□□□□ -1.45
COL8A1P27658 HMGB3P11-201ENST00000440127 604 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.97□□□□□ -1.45
COL8A1P27658 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC5.97□□□□□ -1.45
COL8A1P27658 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.97□□□□□ -1.45
COL8A1P27658 RPL7P59-201ENST00000447700 943 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.97□□□□□ -1.45
COL8A1P27658 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC5.97□□□□□ -1.45
COL8A1P27658 AC005008.1-201ENST00000456151 612 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AC079168.1-201ENST00000458741 345 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 RPL7P5-201ENST00000471472 736 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 SLC25A15P5-201ENST00000508033 253 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.97□□□□□ -1.45
COL8A1P27658 RNU6-1004P-201ENST00000516584 111 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 RNU6-1220P-201ENST00000517126 108 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AC022080.3-201ENST00000544433 482 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.97□□□□□ -1.45
COL8A1P27658 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.97□□□□□ -1.45
COL8A1P27658 AC125232.2-201ENST00000592457 143 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AL589743.6-201ENST00000611025 117 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AL021879.1-201ENST00000611756 288 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 AC011890.2-201ENST00000613393 294 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 SNORA17.5-201ENST00000630429 132 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 AL354702.2-202ENST00000641481 890 ntBASIC5.97□□□□□ -1.45
COL8A1P27658 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL8A1P27658 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC5.97□□□□□ -1.45
COL8A1P27658 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL8A1P27658 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.45
COL8A1P27658 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC5.96□□□□□ -1.45
COL8A1P27658 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC5.96□□□□□ -1.45
COL8A1P27658 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.45
COL8A1P27658 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC5.96□□□□□ -1.45
COL8A1P27658 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.96□□□□□ -1.46
COL8A1P27658 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 MAPK10-357ENST00000641831 2858 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 RN7SKP174-201ENST00000363803 330 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 RNU6-289P-201ENST00000364093 107 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 RHOT1P2-201ENST00000366423 333 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 U3.52-201ENST00000384034 216 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 RNU6-890P-201ENST00000384121 107 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 Y_RNA.496-201ENST00000384444 101 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 SAR1AP2-201ENST00000392696 594 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 AL034403.1-201ENST00000399414 885 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 AL035422.1-201ENST00000414193 397 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 EIF4EP1-201ENST00000422311 642 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.96□□□□□ -1.46
COL8A1P27658 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.96□□□□□ -1.46
COL8A1P27658 AL354707.3-201ENST00000427308 331 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 AC119618.1-201ENST00000434191 222 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 RPS3AP54-201ENST00000435535 734 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 AC105402.2-201ENST00000438503 358 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 AL645936.1-201ENST00000441979 518 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 RPL5P7-201ENST00000444235 813 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 MED28P3-201ENST00000444288 531 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC5.96□□□□□ -1.46
COL8A1P27658 PTMAP1-205ENST00000455552 325 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 RN7SL254P-201ENST00000460609 284 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 AC058823.1-201ENST00000485315 474 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.96□□□□□ -1.46
COL8A1P27658 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.96□□□□□ -1.46
COL8A1P27658 RNU6-1213P-201ENST00000517075 94 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 AC008562.1-201ENST00000521763 330 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 AC018690.1-201ENST00000608144 626 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 OR10AB1P-201ENST00000609613 938 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 MIR6768-201ENST00000610734 72 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 AC130448.2-201ENST00000624082 374 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC5.96□□□□□ -1.46
COL8A1P27658 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC5.96□□□□□ -1.46
COL8A1P27658 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL8A1P27658 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL8A1P27658 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC5.96□□□□□ -1.46
COL8A1P27658 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC5.96□□□□□ -1.46
COL8A1P27658 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 299.8 ms