Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC3.83□□□□□ -1.8
COL6A3P12111 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 RNU11-201ENST00000387069 134 ntBASIC3.83□□□□□ -1.8
COL6A3P12111 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.83□□□□□ -1.8
COL6A3P12111 AL360012.1-201ENST00000602813 131 ntBASIC3.83□□□□□ -1.8
COL6A3P12111 AP000648.2-201ENST00000624182 404 ntBASIC3.83□□□□□ -1.8
COL6A3P12111 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.83□□□□□ -1.8
COL6A3P12111 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A3P12111 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 MIR887-201ENST00000401258 79 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 snoU13.26-201ENST00000459452 105 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 RPS20P22-201ENST00000473700 357 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC3.82□□□□□ -1.8
COL6A3P12111 SNORA70.18-201ENST00000516696 98 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
COL6A3P12111 RPL23AP87-202ENST00000573039 466 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 MIR4319-201ENST00000577285 85 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
COL6A3P12111 MTCO1P9-201ENST00000505577 1534 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
COL6A3P12111 SNORA5.1-201ENST00000384275 131 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.82□□□□□ -1.8
COL6A3P12111 RPS17P11-201ENST00000474297 293 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 AL390816.3-201ENST00000604527 1066 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 RNA5SP439-201ENST00000617595 124 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
COL6A3P12111 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 AL451142.2-201ENST00000429076 2090 ntBASIC3.82□□□□□ -1.8
COL6A3P12111 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC3.82□□□□□ -1.8
COL6A3P12111 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A3P12111 LIPT1P1-201ENST00000415870 1186 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 CKS1BP3-201ENST00000600888 237 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 AC073073.2-201ENST00000609827 2578 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL6A3P12111 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A3P12111 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL6A3P12111 AL138885.1-201ENST00000405921 675 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 AC079809.1-201ENST00000415468 276 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 AC017079.2-201ENST00000416102 485 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 AC239809.1-201ENST00000450470 217 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 AC093815.1-201ENST00000508637 280 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 BNIP3P41-202ENST00000616656 861 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 AL031658.2-201ENST00000616850 651 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A3P12111 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A3P12111 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
COL6A3P12111 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A3P12111 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC3.81□□□□□ -1.8
COL6A3P12111 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 BMS1P22-201ENST00000414726 313 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A3P12111 RPS17P13-201ENST00000448974 407 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.81□□□□□ -1.8
COL6A3P12111 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 AC026801.2-201ENST00000515352 425 ntBASIC3.81□□□□□ -1.8
COL6A3P12111 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A3P12111 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A3P12111 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
COL6A3P12111 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.8□□□□□ -1.8
COL6A3P12111 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC3.8□□□□□ -1.8
COL6A3P12111 OR1AA1P-201ENST00000419597 916 ntBASIC3.8□□□□□ -1.8
COL6A3P12111 AC233981.1-201ENST00000423224 461 ntBASIC3.8□□□□□ -1.8
COL6A3P12111 AC097262.1-201ENST00000452559 548 ntBASIC3.8□□□□□ -1.8
COL6A3P12111 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.8□□□□□ -1.8
COL6A3P12111 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.8□□□□□ -1.8
COL6A3P12111 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC3.8□□□□□ -1.8
COL6A3P12111 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL6A3P12111 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL6A3P12111 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL6A3P12111 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms