Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC008549.2-201ENST00000333482 706 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 SNORD74.4-201ENST00000364129 80 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 OR6C69P-201ENST00000394268 893 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD4P09016 OR51B3P-201ENST00000412287 913 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC009302.1-201ENST00000417147 390 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 AL645638.1-201ENST00000440519 361 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 GEMIN8P3-201ENST00000445417 720 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 RPL23AP24-201ENST00000458203 385 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC091153.1-201ENST00000466297 402 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 NPM1P17-201ENST00000479221 602 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC021146.7-201ENST00000509604 775 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HOXD4P09016 SCARNA1-201ENST00000517138 166 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 C1DP5-201ENST00000525775 383 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 AC004923.2-201ENST00000529649 369 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXD4P09016 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXD4P09016 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HOXD4P09016 AC025946.2-201ENST00000603398 234 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC015849.2-201ENST00000605738 409 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC090948.1-201ENST00000607464 549 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC017076.1-201ENST00000607613 578 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD4P09016 AC012409.3-201ENST00000611343 981 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC016597.2-201ENST00000613256 341 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 MIR8084-201ENST00000614105 89 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD4P09016 MIR4727-201ENST00000622232 55 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AC090772.4-201ENST00000623599 362 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD4P09016 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD4P09016 LINC01808-202ENST00000641680 1116 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 AL445437.1-201ENST00000623157 3087 ntBASIC4.11□□□□□ -1.75
HOXD4P09016 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD4P09016 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD4P09016 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.1□□□□□ -1.75
HOXD4P09016 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
HOXD4P09016 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD4P09016 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
HOXD4P09016 AL031985.3-201ENST00000565390 2449 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD4P09016 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXD4P09016 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 AL391219.1-201ENST00000422570 483 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 RGS17P1-201ENST00000423358 553 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 RPS27AP12-201ENST00000429552 465 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 FHP1-201ENST00000442741 703 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 RNFT1P2-201ENST00000443064 757 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 AC099063.2-201ENST00000446360 662 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 ISCUP1-201ENST00000454451 448 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 MTATP6P14-201ENST00000455189 673 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD4P09016 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD4P09016 TPT1P8-201ENST00000510120 555 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 CYCSP28-201ENST00000534284 321 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 AC023158.1-201ENST00000561632 1025 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD4P09016 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD4P09016 AC034229.4-201ENST00000607861 441 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AC005156.1-201ENST00000613371 573 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AC018926.1-201ENST00000616335 435 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AC068880.4-201ENST00000623082 495 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AP001002.2-201ENST00000625137 386 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 AL356118.1-201ENST00000635272 1078 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 FRG1DP-201ENST00000635586 771 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXD4P09016 AC135352.1-201ENST00000506173 1418 ntBASIC4.1□□□□□ -1.75
HOXD4P09016 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD4P09016 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXD4P09016 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD4P09016 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms