Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RNA5SP241-201ENST00000391326 114 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 VTA1P1-201ENST00000414044 866 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 RPL6P29-201ENST00000414863 865 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AL807761.1-201ENST00000417622 171 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC234781.2-201ENST00000426370 994 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 YWHAZP7-201ENST00000436906 631 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 MTCO2P18-201ENST00000457151 658 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 GYG1P1-201ENST00000460864 698 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC092754.2-201ENST00000463506 460 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 RPL7AP6-201ENST00000477943 801 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC090114.3-201ENST00000479267 829 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 RFPL1S-203ENST00000539579 330 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AADACP1-206ENST00000561502 1193 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AP001094.1-201ENST00000579805 193 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC103987.3-201ENST00000582071 292 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 MIR4697-201ENST00000582977 78 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC087763.1-201ENST00000603391 286 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC107075.1-201ENST00000613695 314 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC090510.2-201ENST00000617465 629 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC073530.2-201ENST00000623987 261 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 AC000367.1-201ENST00000452711 1766 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 Z95331.1-201ENST00000623075 23112 ntBASIC5.21□□□□□ -1.58
DKK3Q9UBP4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.21□□□□□ -1.58
DKK3Q9UBP4 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 ENSAP3-201ENST00000312710 333 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 HMGB3P18-201ENST00000406327 590 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 TCEA1P4-201ENST00000415066 844 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC006466.1-201ENST00000438721 289 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 HMGB1P48-201ENST00000446155 598 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 RPS27AP8-201ENST00000452665 445 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 MTND3P7-201ENST00000474435 343 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AP000676.2-201ENST00000529711 301 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AL445222.1-201ENST00000607259 628 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 AC100827.5-201ENST00000615883 426 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 ZNF663P-202ENST00000641770 1131 ntBASIC5.2□□□□□ -1.58
DKK3Q9UBP4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.2□□□□□ -1.58
DKK3Q9UBP4 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
DKK3Q9UBP4 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms