Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
USP39Q53GS9 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP39Q53GS9 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
USP39Q53GS9 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP39Q53GS9 RNA5SP326-201ENST00000363209 110 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
USP39Q53GS9 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
USP39Q53GS9 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP39Q53GS9 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 RNA5SP487-201ENST00000410186 122 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 RN7SKP33-201ENST00000410942 340 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC096921.1-201ENST00000411661 375 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC010975.2-201ENST00000427781 588 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 MED28P3-201ENST00000444288 531 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 WASF1P1-201ENST00000447560 1131 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC002553.2-201ENST00000453217 340 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 RPL7P6-201ENST00000480903 738 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 RPL7AP10-201ENST00000481016 791 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 MYL12BP2-201ENST00000503948 512 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AC116347.2-201ENST00000514912 523 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AL121579.1-201ENST00000555129 305 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC005341.1-201ENST00000571086 708 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.46□□□□□ -1.54
USP39Q53GS9 MIR3934-201ENST00000579806 107 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC006539.2-201ENST00000601729 572 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AC018618.2-201ENST00000604770 446 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 AL592221.1-201ENST00000605266 382 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC019131.2-201ENST00000609071 870 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 SEPT14P19-203ENST00000633205 211 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 MIR4278-201ENST00000636094 69 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
USP39Q53GS9 OR55B1P-203ENST00000641518 2602 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP39Q53GS9 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.46□□□□□ -1.54
USP39Q53GS9 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP39Q53GS9 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.46□□□□□ -1.54
USP39Q53GS9 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
USP39Q53GS9 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
USP39Q53GS9 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC5.46□□□□□ -1.54
USP39Q53GS9 AC003973.3-201ENST00000624863 2822 ntBASIC5.46□□□□□ -1.54
USP39Q53GS9 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP39Q53GS9 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
USP39Q53GS9 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 NLRP3P1-201ENST00000622303 1785 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
USP39Q53GS9 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.45□□□□□ -1.54
USP39Q53GS9 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 AL121886.1-201ENST00000358609 435 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 RNU6-1251P-201ENST00000364502 107 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
USP39Q53GS9 RN7SKP126-201ENST00000411143 300 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 RPL7P8-201ENST00000411964 730 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC023128.2-201ENST00000420880 1223 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC007161.1-204ENST00000423039 460 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 MRPS21P2-201ENST00000424704 264 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 RBMY2QP-201ENST00000429799 1147 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 NPM1P18-201ENST00000434232 732 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 UBE2V1P8-201ENST00000437166 265 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC241584.1-201ENST00000438469 1241 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.45□□□□□ -1.54
USP39Q53GS9 AC003071.1-201ENST00000451219 789 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC5.45□□□□□ -1.54
USP39Q53GS9 KATNBL1P6-201ENST00000453433 915 ntBASIC5.45□□□□□ -1.54
USP39Q53GS9 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms