Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 OR5B10P-201ENST00000532869 642 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AC244258.1-201ENST00000637553 1071 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AL392088.2-201ENST00000637607 285 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 MTCO1P12-201ENST00000414273 1543 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AP004289.2-201ENST00000444413 1457 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 NPM1P38-201ENST00000403835 865 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 RN7SKP199-201ENST00000410325 305 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AC024224.1-201ENST00000538284 609 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 AC095038.2-201ENST00000621464 1070 ntBASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CCDC88AQ3V6T2 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 MAPK10-303ENST00000641324 3959 ntBASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 AC005300.1-201ENST00000428401 373 ntBASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 AC236972.1-201ENST00000433225 199 ntBASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 AC022695.1-201ENST00000522089 237 ntBASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 AC058791.1-201ENST00000608412 3198 ntBASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC88AQ3V6T2 OR51C1P-202ENST00000641159 1444 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AC017078.1-201ENST00000416146 368 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 RPL21P23-201ENST00000446654 460 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 CYCSP30-201ENST00000546447 172 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 MIR5187-201ENST00000583479 76 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AL354760.1-201ENST00000608357 643 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AC120036.2-201ENST00000509729 1474 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 PGBD4P8-201ENST00000412993 562 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 TCEA1P2-201ENST00000420496 906 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 CYCSP35-201ENST00000451978 304 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 CYCSP53-201ENST00000455540 265 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 MIMT1-201ENST00000597105 1050 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 AL591424.2-201ENST00000617023 128 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 MIR8057-201ENST00000620957 69 ntBASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC88AQ3V6T2 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 MUC2-202ENST00000613187 4845 ntBASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 Y_RNA.500-201ENST00000384466 111 ntBASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 AP001486.1-201ENST00000463339 476 ntBASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 RPL23AP12-201ENST00000467573 473 ntBASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 RPS29P2-201ENST00000479278 136 ntBASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 MTND6P33-201ENST00000571794 183 ntBASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 OOSP1P2-201ENST00000579644 351 ntBASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 AL137849.1-201ENST00000604767 169 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms