Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC007529.1-201ENST00000418574 2178 ntBASIC3.15□□□□□ -1.9
HLA-DMBP28068 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HLA-DMBP28068 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.15□□□□□ -1.9
HLA-DMBP28068 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.15□□□□□ -1.9
HLA-DMBP28068 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HLA-DMBP28068 RNU1-14P-201ENST00000362759 152 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 RN7SKP227-201ENST00000364445 330 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 ACTR3P2-201ENST00000439585 1257 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AL512326.1-201ENST00000443050 721 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 RAB28P3-201ENST00000448325 597 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 BNIP3P41-201ENST00000503774 571 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 SNORA31.9-201ENST00000516429 84 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 RNA5SP49-201ENST00000516450 115 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 IGKV2D-23-201ENST00000518179 286 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC084757.1-201ENST00000559987 490 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC244505.7-201ENST00000599675 272 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 HMGB1P50-201ENST00000605814 607 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 SNORA35B-201ENST00000607417 129 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC090246.1-201ENST00000616499 426 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC022893.2-201ENST00000564832 3296 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.15□□□□□ -1.91
HLA-DMBP28068 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HLA-DMBP28068 CASC19-284ENST00000642142 1868 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC007342.7-201ENST00000624610 2337 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HLA-DMBP28068 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HLA-DMBP28068 EIF2AP4-201ENST00000424793 1781 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 AL049555.1-201ENST00000562834 1933 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 AC009229.4-201ENST00000623854 1947 ntBASIC3.15□□□□□ -1.91
HLA-DMBP28068 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 RNU6-146P-201ENST00000384602 108 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 PGBD4P8-201ENST00000412993 562 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 NUTF2P3-201ENST00000448540 384 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 CALM1P2-201ENST00000452941 448 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 RPL7AP52-201ENST00000458096 790 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC103987.1-201ENST00000473394 348 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC093824.1-201ENST00000508796 343 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 KRT19P6-201ENST00000510983 209 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 MIR2114-201ENST00000516645 80 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC068714.1-201ENST00000559623 800 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AL360157.1-201ENST00000565962 87 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC007599.1-201ENST00000568688 1174 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC069366.1-201ENST00000583159 838 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 MIR3138-201ENST00000585238 82 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AC007620.3-201ENST00000608131 497 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 MIR7702-201ENST00000621931 59 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 BANCR-201ENST00000624238 473 ntTSL 2 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 AL139254.3-201ENST00000641097 674 ntBASIC3.14□□□□□ -1.91
HLA-DMBP28068 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
HLA-DMBP28068 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HLA-DMBP28068 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms