Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
COL6A1P12109 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A1P12109 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
COL6A1P12109 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 AC144833.1-201ENST00000567953 4089 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 AC000367.1-201ENST00000452711 1766 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A1P12109 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A1P12109 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A1P12109 RNA5SP326-201ENST00000363209 110 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 RNU6-353P-201ENST00000364266 108 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 snoZ40.1-201ENST00000364540 72 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL6A1P12109 AC096921.1-201ENST00000411661 375 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 GSTM3P2-201ENST00000412746 530 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 HMGB3P31-201ENST00000413333 595 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC119751.6-201ENST00000416712 186 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 AC092170.1-201ENST00000440211 356 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.91□□□□□ -1.46
COL6A1P12109 OR52E3P-201ENST00000452083 936 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC104634.1-201ENST00000452720 462 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AL035407.2-201ENST00000454090 378 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 RPL12P39-201ENST00000455456 496 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC091153.1-201ENST00000466297 402 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 RN7SL354P-201ENST00000469282 294 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC5.91□□□□□ -1.46
COL6A1P12109 AC103987.1-201ENST00000473394 348 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL6A1P12109 IGBP1P5-201ENST00000507524 1000 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 BTF3P13-201ENST00000513224 490 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 IGKV2D-10-201ENST00000520194 281 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 SMARCE1P4-201ENST00000523647 241 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 HIGD1AP17-201ENST00000554576 276 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC116553.2-201ENST00000564203 463 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC087481.2-201ENST00000565492 330 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 UBE2FP2-201ENST00000566646 462 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 MIR5096-201ENST00000583713 70 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC107982.3-201ENST00000584957 985 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 AC022146.1-201ENST00000595307 847 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 AC069234.5-201ENST00000611056 416 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC124312.6-202ENST00000623624 418 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
COL6A1P12109 AL034549.2-201ENST00000618285 3373 ntBASIC5.91□□□□□ -1.46
COL6A1P12109 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A1P12109 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A1P12109 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.91□□□□□ -1.46
COL6A1P12109 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.91□□□□□ -1.46
COL6A1P12109 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A1P12109 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL6A1P12109 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL6A1P12109 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL6A1P12109 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A1P12109 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
COL6A1P12109 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.9□□□□□ -1.46
COL6A1P12109 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.9□□□□□ -1.46
COL6A1P12109 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.9□□□□□ -1.46
COL6A1P12109 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A1P12109 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A1P12109 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A1P12109 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A1P12109 SNORA70.2-201ENST00000364506 135 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A1P12109 MIR142-201ENST00000384835 87 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 MIR600-201ENST00000385007 98 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 TAF9BP1-201ENST00000396646 746 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 PGBD4P8-201ENST00000412993 562 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 RPSAP35-201ENST00000413753 818 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 EI24P4-201ENST00000423683 1078 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 OR10T1P-201ENST00000424327 947 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AC009965.2-201ENST00000425328 970 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 DPRXP1-201ENST00000426312 460 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 MRPS10P2-201ENST00000431226 381 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A1P12109 RPS20P1-201ENST00000434853 354 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 RPL12P46-201ENST00000436610 195 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A1P12109 AC097499.1-201ENST00000444277 208 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.9□□□□□ -1.46
COL6A1P12109 RNU7-140P-201ENST00000459546 60 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
COL6A1P12109 AC104687.1-201ENST00000485829 412 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AC021146.8-201ENST00000507455 733 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.9□□□□□ -1.46
COL6A1P12109 GAPDHP62-201ENST00000515313 990 ntBASIC5.9□□□□□ -1.46
COL6A1P12109 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 182 ms