Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 OR11I1P-201ENST00000486033 954 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 AC020890.1-201ENST00000491837 504 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 MRPS33P2-201ENST00000507850 322 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 BTG4P1-201ENST00000510421 183 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 DEFB130C-202ENST00000530001 230 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.23□□□□□ -1.73
LMX1BO60663 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.23□□□□□ -1.73
LMX1BO60663 NMNAT1P1-201ENST00000554095 876 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 UBE2FP2-201ENST00000566646 462 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.23□□□□□ -1.73
LMX1BO60663 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.23□□□□□ -1.73
LMX1BO60663 IMMP1LP1-201ENST00000605170 488 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AL133507.1-201ENST00000605269 557 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AC016877.3-201ENST00000606778 504 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AC013468.1-201ENST00000608680 598 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.23□□□□□ -1.73
LMX1BO60663 AP000255.1-201ENST00000610276 676 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AC098679.4-201ENST00000624241 654 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC4.23□□□□□ -1.73
LMX1BO60663 MIR1322-201ENST00000638013 71 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 LINC02211-204ENST00000642024 1070 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 MTND4P10-201ENST00000446199 1363 ntBASIC4.23□□□□□ -1.73
LMX1BO60663 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.23□□□□□ -1.73
LMX1BO60663 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LMX1BO60663 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
LMX1BO60663 AC021755.1-201ENST00000559747 1447 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LMX1BO60663 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.22□□□□□ -1.73
LMX1BO60663 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LMX1BO60663 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LMX1BO60663 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LMX1BO60663 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LMX1BO60663 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LMX1BO60663 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.22□□□□□ -1.73
LMX1BO60663 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.22□□□□□ -1.73
LMX1BO60663 RNU1-87P-201ENST00000363727 170 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 SNORD116.1-201ENST00000365628 92 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AL034403.1-201ENST00000399414 885 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AL359643.1-201ENST00000404109 423 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 BTF3P8-201ENST00000414577 526 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 LINC01347-201ENST00000417964 355 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 USP9YP26-201ENST00000421008 661 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.22□□□□□ -1.73
LMX1BO60663 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC4.22□□□□□ -1.73
LMX1BO60663 AL390023.1-201ENST00000428836 262 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.22□□□□□ -1.73
LMX1BO60663 MTND1P20-201ENST00000430341 950 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC016712.1-201ENST00000431088 378 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 AL137845.2-201ENST00000444292 988 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC023512.1-201ENST00000444513 499 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 MTCYBP42-201ENST00000444653 1130 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 HMGB3P6-201ENST00000444896 598 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.22□□□□□ -1.73
LMX1BO60663 OR52J1P-201ENST00000450596 932 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LMX1BO60663 MTND2P28-201ENST00000457540 1044 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AL672167.3-201ENST00000465951 960 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC108751.2-201ENST00000469993 231 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC096741.1-201ENST00000472250 846 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.22□□□□□ -1.73
LMX1BO60663 RN7SL319P-201ENST00000480656 221 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 IGLV2-34-201ENST00000490007 283 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 RPL23AP72-201ENST00000492447 435 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 OR2A20P-203ENST00000498397 1268 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.22□□□□□ -1.73
LMX1BO60663 Y_RNA.655-201ENST00000515919 96 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 SNORA3.4-201ENST00000515969 96 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 RN7SKP141-201ENST00000516167 338 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 RNU5A-4P-201ENST00000516588 111 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 IGKV2D-10-201ENST00000520194 281 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.22□□□□□ -1.73
LMX1BO60663 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.22□□□□□ -1.73
LMX1BO60663 AP000926.4-201ENST00000527351 454 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 MTND2P26-201ENST00000528255 1029 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 AP001804.2-201ENST00000533932 910 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 AP006289.1-201ENST00000538089 277 ntBASIC4.22□□□□□ -1.73
LMX1BO60663 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.22□□□□□ -1.73
LMX1BO60663 AL049839.1-201ENST00000556151 657 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms