Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC235565.1-201ENST00000456962 1325 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC112243.1-201ENST00000623949 3851 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 NACAP2-201ENST00000318548 624 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 VTRNA3-1P-201ENST00000362552 102 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RNU5E-8P-201ENST00000363502 116 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RNU6-1097P-201ENST00000363586 107 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RNA5SP140-201ENST00000364524 92 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 SNORA7A-201ENST00000384765 139 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC026310.1-201ENST00000396004 378 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AL023284.3-201ENST00000407767 334 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RSU1P3-201ENST00000412878 835 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 ATP5JP1-201ENST00000431631 322 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 FTH1P1-201ENST00000437933 532 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC016691.1-201ENST00000441321 413 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 PA2G4P1-201ENST00000442248 1197 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RAC1P7-201ENST00000445367 377 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 TVP23CP1-201ENST00000450317 639 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AL353691.1-201ENST00000451332 387 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 BX276092.4-201ENST00000452056 248 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 NPM1P9-201ENST00000453156 844 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC087385.1-201ENST00000475062 312 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RN7SL267P-201ENST00000485107 261 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC022415.1-202ENST00000486612 523 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 FTH1P8-201ENST00000498161 514 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 MTCO3P44-201ENST00000510977 541 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC114797.1-201ENST00000514003 728 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 MINOS1P4-201ENST00000515470 318 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC060775.1-201ENST00000518241 520 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 IGKV2D-36-201ENST00000518643 226 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 BRD9P1-201ENST00000529855 560 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 PDCD5P1-201ENST00000543528 309 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 CHEK2P2-201ENST00000554701 672 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AL138976.2-201ENST00000563989 694 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 HMGB1P6-201ENST00000569046 646 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC015917.1-201ENST00000579654 510 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 DISC2.1-201ENST00000612827 205 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC126175.1-201ENST00000617041 758 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC007742.2-201ENST00000618226 398 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 MRPL57P1-201ENST00000621486 265 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC100810.6-201ENST00000638068 285 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC027228.2-201ENST00000567141 2154 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC005618.1-201ENST00000606901 3148 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC140Q96MF4 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC140Q96MF4 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.09□□□□□ -1.6
CCDC140Q96MF4 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC5.09□□□□□ -1.6
CCDC140Q96MF4 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC140Q96MF4 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC140Q96MF4 AC004158.1-201ENST00000564508 4319 ntBASIC5.09□□□□□ -1.6
CCDC140Q96MF4 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AF287957.1-201ENST00000607368 1595 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 SALL4P7-201ENST00000555779 3120 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC074141.1-201ENST00000588129 2995 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC010624.4-201ENST00000597606 1351 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms