Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CR589904.2-201ENST00000612533 440 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS39Q96JC1 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS39Q96JC1 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 NPM1P10-201ENST00000398310 865 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 OR2X1P-201ENST00000421144 687 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC092832.1-201ENST00000422934 400 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 PRELID3BP10-201ENST00000431957 584 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 TRIM60P13-201ENST00000432350 1283 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AL035458.1-201ENST00000433096 585 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 CEACAMP6-201ENST00000452007 574 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC096992.1-201ENST00000459808 709 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC079804.1-201ENST00000461922 436 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC010326.1-201ENST00000462726 602 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 RPL23AP71-201ENST00000470966 469 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 RPL21P103-201ENST00000479921 488 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AP000827.1-201ENST00000527814 258 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 PHBP17-201ENST00000528576 541 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 NOP56P3-201ENST00000549457 385 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 MIR4270-201ENST00000581799 70 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC069061.3-201ENST00000582254 823 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 CBX3P2-202ENST00000583365 535 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 Mico1.1-201ENST00000611698 204 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 AP005019.3-201ENST00000620418 560 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 CDRT1-208ENST00000630868 794 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS39Q96JC1 DCAF13P1-201ENST00000495256 1330 ntBASIC4.39□□□□□ -1.71
VPS39Q96JC1 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
VPS39Q96JC1 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 KPNA2P2-201ENST00000419546 1489 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 ZNF33CP-201ENST00000432492 2030 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS39Q96JC1 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS39Q96JC1 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS39Q96JC1 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 RPS23P10-201ENST00000416185 486 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 AC008065.1-201ENST00000428525 348 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 AL359265.2-201ENST00000434367 631 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 AC114495.1-201ENST00000441274 436 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 ABCF2P2-201ENST00000450549 296 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 OR9N1P-202ENST00000494289 481 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS39Q96JC1 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 AC007448.1-201ENST00000582714 234 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 LLPHP1-201ENST00000603571 367 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 AC004943.3-201ENST00000624116 600 ntBASIC4.38□□□□□ -1.71
VPS39Q96JC1 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS39Q96JC1 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS39Q96JC1 MTND4P26-201ENST00000415971 1359 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms