Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AL591926.8-201ENST00000616876 211 ntBASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZNF540Q8NDQ6 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 KPNA2P2-201ENST00000419546 1489 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 RNA5SP52-201ENST00000362448 134 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 RN7SKP95-201ENST00000362860 303 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 RNA5SP428-201ENST00000365129 132 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 MIR192-201ENST00000384915 110 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 Y_RNA.625-201ENST00000411256 107 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 XKRYP4-201ENST00000414395 483 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 CYP4F29P-201ENST00000420685 446 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC115285.1-201ENST00000424879 736 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 PSMA2P3-201ENST00000429685 675 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 RPL37P1-201ENST00000432310 284 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 CEACAMP9-201ENST00000442990 513 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 XKRYP5-201ENST00000449659 483 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 TPT1P13-201ENST00000449760 499 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 CEACAMP10-202ENST00000495431 496 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AL035404.1-201ENST00000497982 568 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC093755.1-201ENST00000512950 1023 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 MTCO1P30-201ENST00000515244 580 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 RNA5SP154-201ENST00000516193 111 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC010306.1-201ENST00000523223 1117 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AP004242.1-201ENST00000533701 349 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 MIR4270-201ENST00000581799 70 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AL162233.1-201ENST00000620014 944 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC006971.1-201ENST00000407916 4486 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AC090337.1-201ENST00000579651 2074 ntBASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
ZNF540Q8NDQ6 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 SNORD51.1-201ENST00000365405 77 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 EIF5P1-201ENST00000400019 1231 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AF186996.5-201ENST00000418098 904 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 CENPIP1-201ENST00000425713 902 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 XKRY2-201ENST00000442362 1093 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 RSL24D1P2-201ENST00000445584 366 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC006463.2-201ENST00000473326 348 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 TMED11P-201ENST00000479478 690 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC090013.1-201ENST00000485147 480 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 RN7SL205P-201ENST00000490174 284 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC108145.1-201ENST00000503770 153 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 GAPDHP56-201ENST00000506031 988 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 RNA5SP43-201ENST00000516559 110 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 SOD1P3-201ENST00000518682 454 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC021006.3-201ENST00000530771 192 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 OR4C2P-201ENST00000530855 1064 ntBASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.25□□□□□ -1.73
ZNF540Q8NDQ6 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms