Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC009238.2-201ENST00000431026 355 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 ISCA1P2-201ENST00000438679 421 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 CEACAMP7-201ENST00000444105 496 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC015724.1-201ENST00000478577 156 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 NIFKP7-201ENST00000503365 834 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MYL12BP2-201ENST00000503948 512 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC097173.1-201ENST00000505862 819 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 RNA5SP135-201ENST00000517019 125 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC018442.3-201ENST00000523025 183 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 NAP1L1P1-201ENST00000524793 1063 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 UBE2NP1-201ENST00000545592 458 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC116553.2-201ENST00000564203 463 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 OR4K7P-201ENST00000580232 945 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AL451086.1-201ENST00000605596 223 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC068870.2-201ENST00000620635 389 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC074140.1-201ENST00000621617 208 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AL359757.1-201ENST00000623176 255 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AC119744.1-201ENST00000454746 1715 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 HSPA8P17-201ENST00000427029 1382 ntBASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PTCHD3Q3KNS1 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 SLC10A5P1-201ENST00000379063 1306 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AL512646.1-201ENST00000269395 1077 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 IL6STP1-201ENST00000346911 1020 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 SNORA17.1-201ENST00000362945 126 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 RNU6-839P-201ENST00000363347 108 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 RNU6-931P-201ENST00000363850 107 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 RNU6-621P-201ENST00000364752 109 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 MIR600-201ENST00000385007 98 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 NUDT19P3-201ENST00000404698 555 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AL390316.1-201ENST00000406279 553 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC211486.3-201ENST00000412694 621 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC016907.1-201ENST00000419483 435 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC048351.1-201ENST00000420064 602 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC093155.1-201ENST00000440164 826 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 TXNP5-201ENST00000441043 315 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC073648.4-201ENST00000442655 781 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 TPTE2P6-202ENST00000445572 1007 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 RPS27AP15-201ENST00000447672 466 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AL034418.1-201ENST00000448675 860 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC022431.1-201ENST00000450941 438 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 SYPL1P1-201ENST00000473622 768 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 MTND3P7-201ENST00000474435 343 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 ACTG1P13-201ENST00000486987 1043 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC021146.8-201ENST00000507455 733 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AC010587.2-201ENST00000511727 448 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 HNRNPKP5-201ENST00000515300 253 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 RN7SKP66-201ENST00000516681 231 ntBASIC5.02□□□□□ -1.61
PTCHD3Q3KNS1 AP006245.2-201ENST00000522004 300 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms