Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.06□□□□□ -1.76
PKNOX1P55347 RPL23AP46-201ENST00000438548 490 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 RPL36AP13-201ENST00000457490 317 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 MTND2P28-201ENST00000457540 1044 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 RPL35AP28-201ENST00000459730 331 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.06□□□□□ -1.76
PKNOX1P55347 RPL35P6-201ENST00000490024 372 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 AC090543.1-201ENST00000492168 485 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 HMGB1P3-201ENST00000502802 616 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 AK3P4-201ENST00000504283 583 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC111000.3-201ENST00000508057 576 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.06□□□□□ -1.76
PKNOX1P55347 RNU6-889P-201ENST00000517189 103 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.06□□□□□ -1.76
PKNOX1P55347 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC063949.1-201ENST00000552900 865 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC004825.2-201ENST00000616634 455 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 AP006248.2-201ENST00000623309 592 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.06□□□□□ -1.76
PKNOX1P55347 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
PKNOX1P55347 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PKNOX1P55347 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.06□□□□□ -1.76
PKNOX1P55347 AC015813.6-201ENST00000624409 5808 ntBASIC4.06□□□□□ -1.76
PKNOX1P55347 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PKNOX1P55347 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PKNOX1P55347 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 OR5T3-201ENST00000303059 1023 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 RNU6-146P-201ENST00000384602 108 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 MIR3074-201ENST00000384885 81 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
PKNOX1P55347 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
PKNOX1P55347 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.05□□□□□ -1.76
PKNOX1P55347 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.05□□□□□ -1.76
PKNOX1P55347 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC048351.1-201ENST00000420064 602 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AC069213.2-201ENST00000420238 366 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AL391219.1-201ENST00000422570 483 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AL590623.1-201ENST00000427864 105 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 RN7SL610P-201ENST00000463845 291 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 RPL23AP72-201ENST00000492447 435 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 RN7SL691P-201ENST00000494487 301 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AC108157.1-201ENST00000510511 539 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 IGKV2-38-201ENST00000517443 247 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AL360157.1-201ENST00000565962 87 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AC007599.1-201ENST00000568688 1174 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 HNRNPCP4-201ENST00000571636 900 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AC025946.2-201ENST00000603398 234 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AC017076.1-201ENST00000607613 578 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 OR6R2P-201ENST00000609216 300 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.05□□□□□ -1.76
PKNOX1P55347 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.05□□□□□ -1.76
PKNOX1P55347 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 AL137100.1-201ENST00000556703 1620 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 AL158163.1-201ENST00000603915 1649 ntBASIC4.05□□□□□ -1.76
PKNOX1P55347 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PKNOX1P55347 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
PKNOX1P55347 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.04□□□□□ -1.76
PKNOX1P55347 AC017007.4-201ENST00000503353 1352 ntBASIC4.04□□□□□ -1.76
PKNOX1P55347 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
PKNOX1P55347 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms