Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
MSH3P20585 RNA5SP505-201ENST00000364748 108 ntBASIC4.51□□□□□ -1.69
MSH3P20585 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH3P20585 RNU6-398P-201ENST00000384143 109 ntBASIC4.51□□□□□ -1.69
MSH3P20585 RPS3AP23-201ENST00000401762 784 ntBASIC4.51□□□□□ -1.69
MSH3P20585 UBE2V1P11-201ENST00000411559 285 ntBASIC4.51□□□□□ -1.69
MSH3P20585 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.51□□□□□ -1.69
MSH3P20585 AC004690.1-201ENST00000418216 328 ntBASIC4.51□□□□□ -1.69
MSH3P20585 AC023128.2-201ENST00000420880 1223 ntBASIC4.51□□□□□ -1.69
MSH3P20585 UQCRBP1-201ENST00000421129 336 ntBASIC4.51□□□□□ -1.69
MSH3P20585 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSH3P20585 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.51□□□□□ -1.69
MSH3P20585 FABP5P3-201ENST00000437960 408 ntBASIC4.51□□□□□ -1.69
MSH3P20585 MED6P1-201ENST00000439659 713 ntBASIC4.51□□□□□ -1.69
MSH3P20585 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.51□□□□□ -1.69
MSH3P20585 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.51□□□□□ -1.69
MSH3P20585 CASP3P1-201ENST00000446037 609 ntBASIC4.51□□□□□ -1.69
MSH3P20585 PTMAP3-201ENST00000447474 330 ntBASIC4.51□□□□□ -1.69
MSH3P20585 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.51□□□□□ -1.69
MSH3P20585 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
MSH3P20585 AC021205.1-201ENST00000468797 348 ntBASIC4.51□□□□□ -1.69
MSH3P20585 RN7SL809P-201ENST00000482040 297 ntBASIC4.51□□□□□ -1.69
MSH3P20585 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.51□□□□□ -1.69
MSH3P20585 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.51□□□□□ -1.69
MSH3P20585 AC093720.1-201ENST00000505681 714 ntBASIC4.51□□□□□ -1.69
MSH3P20585 RN7SKP92-201ENST00000517266 244 ntBASIC4.51□□□□□ -1.69
MSH3P20585 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.51□□□□□ -1.69
MSH3P20585 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.51□□□□□ -1.69
MSH3P20585 OR5AN2P-201ENST00000534535 896 ntBASIC4.51□□□□□ -1.69
MSH3P20585 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.51□□□□□ -1.69
MSH3P20585 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.51□□□□□ -1.69
MSH3P20585 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.51□□□□□ -1.69
MSH3P20585 BNIP3P38-201ENST00000601117 544 ntBASIC4.51□□□□□ -1.69
MSH3P20585 AC068790.7-201ENST00000602347 528 ntBASIC4.51□□□□□ -1.69
MSH3P20585 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.51□□□□□ -1.69
MSH3P20585 AC099785.1-201ENST00000605697 437 ntBASIC4.51□□□□□ -1.69
MSH3P20585 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC4.51□□□□□ -1.69
MSH3P20585 CYCSP41-201ENST00000616920 296 ntBASIC4.51□□□□□ -1.69
MSH3P20585 AP004607.9-201ENST00000618202 316 ntBASIC4.51□□□□□ -1.69
MSH3P20585 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.51□□□□□ -1.69
MSH3P20585 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.51□□□□□ -1.69
MSH3P20585 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.51□□□□□ -1.69
MSH3P20585 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.51□□□□□ -1.69
MSH3P20585 AC006927.4-201ENST00000639187 543 ntBASIC4.51□□□□□ -1.69
MSH3P20585 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
MSH3P20585 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH3P20585 AC093535.2-201ENST00000624769 2326 ntBASIC4.51□□□□□ -1.69
MSH3P20585 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.51□□□□□ -1.69
MSH3P20585 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
MSH3P20585 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.51□□□□□ -1.69
MSH3P20585 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSH3P20585 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
MSH3P20585 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.51□□□□□ -1.69
MSH3P20585 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSH3P20585 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSH3P20585 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSH3P20585 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.5□□□□□ -1.69
MSH3P20585 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
MSH3P20585 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSH3P20585 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
MSH3P20585 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSH3P20585 CASC19-284ENST00000642142 1868 ntBASIC4.5□□□□□ -1.69
MSH3P20585 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.5□□□□□ -1.69
MSH3P20585 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSH3P20585 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.5□□□□□ -1.69
MSH3P20585 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSH3P20585 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
MSH3P20585 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
MSH3P20585 GLULP6-201ENST00000399502 913 ntBASIC4.5□□□□□ -1.69
MSH3P20585 RPS24P12-201ENST00000402084 394 ntBASIC4.5□□□□□ -1.69
MSH3P20585 RPS4XP9-201ENST00000405151 780 ntBASIC4.5□□□□□ -1.69
MSH3P20585 HDGFP1-201ENST00000405943 252 ntBASIC4.5□□□□□ -1.69
MSH3P20585 FCF1P5-201ENST00000406490 482 ntBASIC4.5□□□□□ -1.69
MSH3P20585 RNA5SP146-201ENST00000410743 123 ntBASIC4.5□□□□□ -1.69
MSH3P20585 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.5□□□□□ -1.69
MSH3P20585 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.5□□□□□ -1.69
MSH3P20585 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.5□□□□□ -1.69
MSH3P20585 YWHAZP2-201ENST00000440317 728 ntBASIC4.5□□□□□ -1.69
MSH3P20585 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.5□□□□□ -1.69
MSH3P20585 NDUFA12P1-201ENST00000455914 406 ntBASIC4.5□□□□□ -1.69
MSH3P20585 RPL7AP28-201ENST00000464513 571 ntBASIC4.5□□□□□ -1.69
MSH3P20585 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.5□□□□□ -1.69
MSH3P20585 STMN1P2-201ENST00000508435 439 ntBASIC4.5□□□□□ -1.69
MSH3P20585 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.5□□□□□ -1.69
MSH3P20585 RNA5SP446-201ENST00000515955 82 ntBASIC4.5□□□□□ -1.69
MSH3P20585 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.5□□□□□ -1.69
MSH3P20585 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
MSH3P20585 AP003717.3-201ENST00000544832 1180 ntBASIC4.5□□□□□ -1.69
MSH3P20585 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.5□□□□□ -1.69
MSH3P20585 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.5□□□□□ -1.69
MSH3P20585 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.5□□□□□ -1.69
MSH3P20585 AC027455.1-201ENST00000574104 594 ntBASIC4.5□□□□□ -1.69
MSH3P20585 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.5□□□□□ -1.69
MSH3P20585 MIR4509-3-201ENST00000578671 94 ntBASIC4.5□□□□□ -1.69
MSH3P20585 MIR4509-2-201ENST00000583920 94 ntBASIC4.5□□□□□ -1.69
MSH3P20585 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.5□□□□□ -1.69
MSH3P20585 AC012254.4-201ENST00000588843 273 ntBASIC4.5□□□□□ -1.69
MSH3P20585 AL022067.1-201ENST00000602426 454 ntBASIC4.5□□□□□ -1.69
MSH3P20585 AC013244.3-201ENST00000605614 388 ntBASIC4.5□□□□□ -1.69
MSH3P20585 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms