| MT1A | P04731 | AC002553.2-201 | ENST00000453217 | 340 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | VN1R40P-201 | ENST00000455196 | 941 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RPL21P11-201 | ENST00000461458 | 483 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RN7SL93P-201 | ENST00000463035 | 293 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC010307.1-201 | ENST00000467206 | 836 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | DCUN1D1-204 | ENST00000469954 | 970 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | PPIAP15-201 | ENST00000479662 | 484 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC123768.1-201 | ENST00000486285 | 432 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC069499.1-201 | ENST00000489433 | 509 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RPL31P61-201 | ENST00000496160 | 376 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC097372.3-201 | ENST00000503593 | 522 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC010460.1-201 | ENST00000507087 | 466 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC093903.1-201 | ENST00000507220 | 405 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | GOLGA5P1-201 | ENST00000507317 | 980 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC108210.1-201 | ENST00000510772 | 825 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RNA5SP179-201 | ENST00000517284 | 121 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC008802.1-201 | ENST00000519121 | 791 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | NDUFA5P2-201 | ENST00000519723 | 344 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC021733.1-201 | ENST00000519786 | 325 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC068672.2-201 | ENST00000524022 | 336 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | OPRM1-223 | ENST00000524163 | 1251 nt | APPRIS ALT1 TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC105031.3-201 | ENST00000524359 | 616 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AP000859.1-201 | ENST00000525536 | 307 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RGS5-206 | ENST00000527988 | 373 nt | TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AP000462.1-201 | ENST00000535704 | 818 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC130404.1-201 | ENST00000539362 | 739 nt | TSL 2 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AP000777.1-201 | ENST00000541495 | 355 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | MFAP5-212 | ENST00000543369 | 972 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL355112.1-201 | ENST00000550309 | 1236 nt | TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | LINC01269-201 | ENST00000553682 | 602 nt | TSL 4 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | ETFRF1-202 | ENST00000553788 | 708 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | HMGB3P26-201 | ENST00000560051 | 582 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL355073.1-201 | ENST00000560296 | 517 nt | TSL 4 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC073878.2-201 | ENST00000565449 | 385 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | GS1-279B7.1-203 | ENST00000565520 | 609 nt | TSL 5 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC010601.1-202 | ENST00000567304 | 547 nt | TSL 4 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AGGF1P6-201 | ENST00000569213 | 976 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC120057.2-201 | ENST00000571520 | 271 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RN7SL703P-201 | ENST00000578485 | 302 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | MIR4644-201 | ENST00000579929 | 84 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | MIR4286-201 | ENST00000580651 | 93 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC005899.4-201 | ENST00000581915 | 514 nt | TSL 4 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC053481.4-201 | ENST00000583164 | 216 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC087749.1-202 | ENST00000585020 | 566 nt | TSL 2 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC022916.3-201 | ENST00000592961 | 742 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RPS4XP16-203 | ENST00000596904 | 698 nt | TSL 5 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC124856.1-201 | ENST00000600819 | 896 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | VN1R85P-201 | ENST00000601587 | 426 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | KLHL23-207 | ENST00000602521 | 630 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC015726.1-202 | ENST00000602532 | 475 nt | TSL 5 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL133247.2-201 | ENST00000603236 | 482 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL606490.9-201 | ENST00000603331 | 271 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC067959.1-201 | ENST00000604334 | 379 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC087468.1-201 | ENST00000604365 | 630 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC091167.4-201 | ENST00000605079 | 184 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC096553.1-201 | ENST00000605169 | 829 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC010857.1-201 | ENST00000606398 | 594 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL008729.1-201 | ENST00000606627 | 553 nt | TSL 4 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC090948.2-201 | ENST00000607363 | 564 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | LINC00649-214 | ENST00000609132 | 668 nt | TSL 5 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC098617.1-203 | ENST00000609865 | 277 nt | TSL 5 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AP000255.1-201 | ENST00000610276 | 676 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL591424.2-201 | ENST00000617023 | 128 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RDM1-221 | ENST00000617591 | 432 nt | TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL731566.2-201 | ENST00000618971 | 317 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL139089.1-201 | ENST00000620372 | 975 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC245452.5-201 | ENST00000620649 | 780 nt | TSL 3 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC095038.2-201 | ENST00000621464 | 1070 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC125613.1-204 | ENST00000636224 | 1248 nt | TSL 5 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AF001550.2-201 | ENST00000636643 | 217 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC079915.1-201 | ENST00000584382 | 2780 nt | TSL 2 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | RAPGEF6-201 | ENST00000296859 | 5618 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | CD86-203 | ENST00000393627 | 1405 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | MGC32805-205 | ENST00000510972 | 1424 nt | TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | LINC02471-203 | ENST00000641941 | 4752 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | UACA-202 | ENST00000379983 | 4859 nt | APPRIS ALT2 TSL 5 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | ENPP3-202 | ENST00000358229 | 3026 nt | TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | SAMD3-214 | ENST00000532763 | 3690 nt | TSL 5 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | CAPS2-206 | ENST00000409799 | 1859 nt | TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | USP9Y-201 | ENST00000338981 | 10036 nt | APPRIS P1 TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | LLPH-201 | ENST00000266604 | 7746 nt | APPRIS P1 TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | MTND4P10-201 | ENST00000446199 | 1363 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | UBE2W-203 | ENST00000517608 | 8426 nt | TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | LIG4-201 | ENST00000356922 | 4096 nt | APPRIS P1 TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | CD69-201 | ENST00000228434 | 1676 nt | APPRIS P1 TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | C2orf66-201 | ENST00000342506 | 1669 nt | APPRIS P1 TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | DNAJC10-208 | ENST00000537515 | 1669 nt | TSL 1 (best) BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | OR6C2-203 | ENST00000641516 | 1682 nt | APPRIS P1 BASIC | 1.2 | □□□□□ -2.22 | | |
| MT1A | P04731 | AL132656.2-201 | ENST00000482985 | 1837 nt | TSL 5 BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | NCOA1-201 | ENST00000288599 | 6952 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | ZNF616-201 | ENST00000330123 | 2563 nt | TSL 1 (best) BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | RPS4XP5-202 | ENST00000449995 | 1334 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | AC233968.1-201 | ENST00000611212 | 1300 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | LYST-201 | ENST00000389793 | 13480 nt | APPRIS P1 TSL 5 BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | SYTL2-213 | ENST00000525702 | 2727 nt | TSL 1 (best) BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | UBE3A-202 | ENST00000397954 | 2873 nt | TSL 5 BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | FAM111B-202 | ENST00000411426 | 3344 nt | TSL 4 BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | OXR1-201 | ENST00000297447 | 1944 nt | TSL 1 (best) BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | RMDN2-204 | ENST00000406384 | 1932 nt | APPRIS P1 TSL 1 (best) BASIC | 1.19 | □□□□□ -2.22 | | |
| MT1A | P04731 | SEC23A-202 | ENST00000537403 | 4215 nt | TSL 2 BASIC | 1.19 | □□□□□ -2.22 | | |