Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLDN9O95484 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CLDN9O95484 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLDN9O95484 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CLDN9O95484 RNU1-14P-201ENST00000362759 152 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AL589655.1-201ENST00000405398 482 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 RNA5SP36-201ENST00000410197 133 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 RN7SKP235-201ENST00000410662 305 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.08□□□□□ -1.76
CLDN9O95484 MFSD13B-201ENST00000420133 1290 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 RPS29P17-201ENST00000430795 166 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.08□□□□□ -1.76
CLDN9O95484 IFNWP4-201ENST00000453148 294 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 Z95152.1-201ENST00000453556 656 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.08□□□□□ -1.76
CLDN9O95484 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 RPL23AP24-201ENST00000458203 385 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CLDN9O95484 RPS20P4-201ENST00000461659 355 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AC107398.1-201ENST00000486904 505 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLDN9O95484 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.08□□□□□ -1.76
CLDN9O95484 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.08□□□□□ -1.76
CLDN9O95484 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 MYL12AP1-201ENST00000518490 515 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 UBTFL9-201ENST00000534504 1148 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.08□□□□□ -1.76
CLDN9O95484 AL158163.1-201ENST00000603915 1649 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.08□□□□□ -1.76
CLDN9O95484 FAM27D1-201ENST00000612308 341 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AC009032.1-201ENST00000617574 431 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AL445363.3-201ENST00000623080 671 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AC015726.3-201ENST00000624501 418 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 AC092162.3-201ENST00000624511 1624 ntBASIC4.08□□□□□ -1.76
CLDN9O95484 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLDN9O95484 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.08□□□□□ -1.76
CLDN9O95484 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.08□□□□□ -1.76
CLDN9O95484 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CLDN9O95484 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.07□□□□□ -1.76
CLDN9O95484 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CLDN9O95484 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
CLDN9O95484 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CLDN9O95484 KPNA2P2-201ENST00000419546 1489 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.07□□□□□ -1.76
CLDN9O95484 IGKV7-3-201ENST00000357453 298 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 MIR448-201ENST00000362131 111 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 RNA5SP447-201ENST00000363749 119 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 AL035696.2-201ENST00000407941 709 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 AC013404.1-201ENST00000413068 249 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 NRBF2P2-201ENST00000413087 861 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.07□□□□□ -1.76
CLDN9O95484 SEC63P1-201ENST00000425785 1258 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 AC073069.1-201ENST00000428657 441 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 CNOT7P1-201ENST00000429006 852 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.07□□□□□ -1.76
CLDN9O95484 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.07□□□□□ -1.76
CLDN9O95484 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.07□□□□□ -1.76
CLDN9O95484 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.07□□□□□ -1.76
CLDN9O95484 EEF1A1P1-201ENST00000447052 739 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.07□□□□□ -1.76
CLDN9O95484 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.07□□□□□ -1.76
CLDN9O95484 RPL35P6-201ENST00000490024 372 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.07□□□□□ -1.76
CLDN9O95484 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.07□□□□□ -1.76
CLDN9O95484 PRELID3BP5-201ENST00000508612 460 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 HPRT1P1-201ENST00000509498 657 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 HMGB1P46-201ENST00000520062 610 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CLDN9O95484 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.07□□□□□ -1.76
CLDN9O95484 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CLDN9O95484 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.07□□□□□ -1.76
CLDN9O95484 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.07□□□□□ -1.76
CLDN9O95484 AC068831.4-201ENST00000556118 109 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
CLDN9O95484 MIR548Y-201ENST00000582739 110 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 AC015813.4-201ENST00000610469 179 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 AC009318.3-201ENST00000616916 503 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.07□□□□□ -1.76
CLDN9O95484 AC097504.1-201ENST00000515103 2415 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CLDN9O95484 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.07□□□□□ -1.76
CLDN9O95484 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
CLDN9O95484 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.07□□□□□ -1.76
CLDN9O95484 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CLDN9O95484 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.06□□□□□ -1.76
CLDN9O95484 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CLDN9O95484 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
CLDN9O95484 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CLDN9O95484 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
CLDN9O95484 RPL32P3-201ENST00000359025 275 ntBASIC4.06□□□□□ -1.76
CLDN9O95484 RNU1-32P-201ENST00000363937 159 ntBASIC4.06□□□□□ -1.76
CLDN9O95484 RHOT1P2-201ENST00000366423 333 ntBASIC4.06□□□□□ -1.76
CLDN9O95484 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms