Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
HOXA3O43365 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 AP000432.2-201ENST00000624164 2048 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 RNA5SP242-201ENST00000364171 118 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
HOXA3O43365 RPS3AP36-201ENST00000398190 775 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 DNAJA1P3-201ENST00000399417 1194 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 FGF7P8-201ENST00000402994 292 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 GSTA9P-201ENST00000406231 611 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 AL354890.1-201ENST00000413730 346 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 CYP4F30P-202ENST00000420048 405 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 AC079355.1-201ENST00000421770 223 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AL513174.1-201ENST00000423182 629 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 SETP9-201ENST00000423837 832 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 SDCBPP2-201ENST00000424643 885 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 MTND3P23-201ENST00000431980 347 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 SNRPEP7-201ENST00000438350 220 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 ACTR3P2-201ENST00000439585 1257 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 UBE2V1P7-201ENST00000446395 340 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 MTCO1P48-201ENST00000448024 1096 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 GAS5-218ENST00000448718 565 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 GAPDHP17-201ENST00000449858 1001 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AL445665.1-202ENST00000452436 324 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 AL122020.1-201ENST00000472287 459 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 RN7SL717P-201ENST00000478343 297 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 AC041039.1-201ENST00000485656 536 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC083795.1-201ENST00000491760 320 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC106872.3-201ENST00000495104 446 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC005912.1-201ENST00000495392 255 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXA3O43365 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 KCTD9P2-201ENST00000512203 1013 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC114781.4-201ENST00000513707 639 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 Y_RNA.702-201ENST00000516843 96 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 AC007448.1-201ENST00000582714 234 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXA3O43365 AC022916.3-201ENST00000592961 742 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 AL451049.1-201ENST00000608672 497 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC096861.1-201ENST00000616652 240 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC002553.4-201ENST00000616896 331 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC005899.7-201ENST00000618199 588 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AP005431.1-201ENST00000618479 319 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 AC068880.5-201ENST00000624331 290 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXA3O43365 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 HSPA8P17-201ENST00000427029 1382 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 RBPJP7-201ENST00000442803 1447 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 RBPJP5-201ENST00000449433 1447 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXA3O43365 USP9YP4-201ENST00000424401 1745 ntBASIC4.86□□□□□ -1.63
HOXA3O43365 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXA3O43365 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
HOXA3O43365 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA3O43365 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXA3O43365 AC012254.3-201ENST00000591183 2117 ntBASIC4.85□□□□□ -1.63
HOXA3O43365 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXA3O43365 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXA3O43365 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HOXA3O43365 AC079753.1-201ENST00000623243 3868 ntBASIC4.85□□□□□ -1.63
HOXA3O43365 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms