Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 OR4K17-201ENST00000315543 1032 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC079741.1-201ENST00000321498 212 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 SDHCP2-201ENST00000398565 501 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 ADAM5-202ENST00000399789 1942 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 RPS3AP23-201ENST00000401762 784 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 BTBD10P2-201ENST00000404779 676 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC069218.2-201ENST00000411665 344 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AL591848.1-201ENST00000413092 322 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AL158050.1-201ENST00000416077 457 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AL357078.2-201ENST00000416486 427 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 RPL21P43-201ENST00000425440 472 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 FABP7P2-201ENST00000429946 379 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 BX276092.4-201ENST00000452056 248 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 snoU13.7-201ENST00000459220 104 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 NFU1-207ENST00000462320 558 ntTSL 4 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC078857.1-201ENST00000469870 667 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AP000926.1-201ENST00000479573 241 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC112518.2-201ENST00000508565 425 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC018797.3-201ENST00000513388 1241 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 RNA5SP249-201ENST00000516127 99 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 SOD1P3-201ENST00000518682 454 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC124293.1-201ENST00000530034 493 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AP003168.1-201ENST00000530091 307 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 AC073869.10-201ENST00000642016 354 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 LINC01355-201ENST00000566551 5444 ntBASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC6.12□□□□□ -1.43
CHMP4AQ9BY43 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 MFSD4BP1-201ENST00000513330 1552 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 DCAF13P1-201ENST00000495256 1330 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 MIR16-2-201ENST00000362117 81 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 RNA5SP191-201ENST00000362585 102 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AP002784.2-201ENST00000397300 549 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 ATP5F1P6-201ENST00000402768 767 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 RPS16P5-201ENST00000406501 404 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 U3.35-201ENST00000408405 208 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 RSU1P3-201ENST00000412878 835 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AL645608.4-201ENST00000423619 154 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 Z77249.1-201ENST00000444622 1175 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 BTF3P6-201ENST00000448054 499 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 RPL37P6-202ENST00000464216 403 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AP000893.1-201ENST00000474462 794 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 RNU6-1102P-201ENST00000516149 96 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 RN7SKP277-201ENST00000516895 283 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 RNU4-60P-201ENST00000517239 135 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 OR4R3P-201ENST00000525084 838 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 OR5M2P-201ENST00000529003 936 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC119501.1-201ENST00000603646 475 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC112503.2-201ENST00000609005 552 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC019193.2-201ENST00000610012 634 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 MIR6820-201ENST00000611508 62 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC107308.1-201ENST00000615897 301 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AL022401.1-201ENST00000619498 108 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 AC097460.3-201ENST00000623099 442 ntBASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
CHMP4AQ9BY43 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms