Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 RNU6-249P-201ENST00000363016 102 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 snoZ40.1-201ENST00000364540 72 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 RNU6-398P-201ENST00000384143 109 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AL357515.1-201ENST00000402967 542 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 GSTA8P-201ENST00000404253 637 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AL008987.1-201ENST00000415528 237 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 TBCAP2-201ENST00000416175 326 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AL590139.1-201ENST00000416267 400 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AL009174.1-201ENST00000426577 416 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 CNOT7P1-201ENST00000429006 852 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AC011753.3-201ENST00000443436 406 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC5.74□□□□□ -1.49
NUP88Q99567 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.74□□□□□ -1.49
NUP88Q99567 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.74□□□□□ -1.49
NUP88Q99567 RNU6-1218P-201ENST00000458990 108 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.74□□□□□ -1.49
NUP88Q99567 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.74□□□□□ -1.49
NUP88Q99567 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.74□□□□□ -1.49
NUP88Q99567 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.74□□□□□ -1.49
NUP88Q99567 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 OR4A2P-201ENST00000527276 913 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 MTCO2P15-201ENST00000532655 656 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC5.74□□□□□ -1.49
NUP88Q99567 VBP1-203ENST00000535916 944 ntTSL 2 BASIC5.74□□□□□ -1.49
NUP88Q99567 AC091042.1-201ENST00000579213 173 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC5.74□□□□□ -1.49
NUP88Q99567 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC5.74□□□□□ -1.49
NUP88Q99567 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 DUXAP3-201ENST00000603616 594 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 AL022401.1-201ENST00000619498 108 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AP000346.3-201ENST00000622821 210 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 CDRT1-208ENST00000630868 794 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 AC100778.3-201ENST00000580060 1750 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
NUP88Q99567 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
NUP88Q99567 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 SDAD1P1-202ENST00000524156 2051 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.73□□□□□ -1.49
NUP88Q99567 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
NUP88Q99567 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.73□□□□□ -1.49
NUP88Q99567 SNORA51.12-201ENST00000384448 134 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 MIR92A2-201ENST00000385299 75 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 AC093719.1-202ENST00000392735 373 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 ATP5F1P2-201ENST00000398143 760 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 SFR1P1-201ENST00000403720 688 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.73□□□□□ -1.49
NUP88Q99567 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.73□□□□□ -1.49
NUP88Q99567 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.73□□□□□ -1.49
NUP88Q99567 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.73□□□□□ -1.49
NUP88Q99567 HMGB1P48-201ENST00000446155 598 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 HMGB1P16-201ENST00000447155 540 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 MTCYBP11-201ENST00000447254 1109 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 AC009220.1-201ENST00000451614 275 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.73□□□□□ -1.49
NUP88Q99567 AC234781.3-201ENST00000452540 973 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 AURKAPS2-201ENST00000454983 333 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 VN1R40P-201ENST00000455196 941 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NUP88Q99567 RPL37P3-201ENST00000456825 293 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 PRDX3P4-201ENST00000470828 747 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 AC006463.2-201ENST00000473326 348 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 RN7SL441P-201ENST00000492388 296 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 RPL23AP72-201ENST00000492447 435 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.73□□□□□ -1.49
NUP88Q99567 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.73□□□□□ -1.49
NUP88Q99567 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.73□□□□□ -1.49
NUP88Q99567 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC5.73□□□□□ -1.49
NUP88Q99567 OR5AN2P-201ENST00000534535 896 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 AP006289.1-201ENST00000538089 277 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 NDUFB4P11-201ENST00000560510 395 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.73□□□□□ -1.49
NUP88Q99567 AC021171.1-201ENST00000603137 706 ntBASIC5.73□□□□□ -1.49
NUP88Q99567 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC5.73□□□□□ -1.49
NUP88Q99567 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC5.73□□□□□ -1.49
NUP88Q99567 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.73□□□□□ -1.49
NUP88Q99567 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.73□□□□□ -1.49
NUP88Q99567 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.73□□□□□ -1.49
NUP88Q99567 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms