Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 AC090017.1-201ENST00000548612 1779 ntBASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 AC079097.1-201ENST00000512187 1399 ntBASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 RARSP1-201ENST00000542842 1418 ntBASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 OR4G11P-202ENST00000642116 1414 ntBASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 AL592429.1-201ENST00000403909 1473 ntBASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 WDR95P-201ENST00000425638 1542 ntBASIC5.64□□□□□ -1.51
PTCHD1Q96NR3 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 RLIMP2-201ENST00000427891 1563 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC020633.1-201ENST00000468439 2247 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AL355488.2-201ENST00000609909 2850 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AL512646.1-201ENST00000269395 1077 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 GAPDHP24-201ENST00000328713 983 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 RNU6-1090P-201ENST00000364065 94 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 RNU6-533P-201ENST00000384144 107 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 BX890604.2-201ENST00000427883 474 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 CBX1P4-201ENST00000439415 457 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 ACA64.1-201ENST00000459171 127 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 RN7SL269P-201ENST00000467795 305 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC091951.2-201ENST00000500762 203 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC008945.1-201ENST00000505144 499 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 POU5F1P7-201ENST00000508759 541 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC093809.1-201ENST00000509155 340 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC108471.1-201ENST00000513977 287 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 RNU6-358P-201ENST00000516564 75 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AF279873.1-201ENST00000523393 313 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 OR5BC1P-201ENST00000529327 739 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC109635.3-201ENST00000529536 185 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 HMGB1P33-201ENST00000563485 527 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AL391840.1-201ENST00000571144 367 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC090616.5-202ENST00000582111 297 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 MIR132-201ENST00000591554 101 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC008277.2-201ENST00000605196 797 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC097468.3-201ENST00000607956 456 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AP001521.1-201ENST00000609150 300 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC243773.3-201ENST00000613270 256 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AL021918.2-201ENST00000613415 194 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 UBE2Q2P2-203ENST00000613592 761 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 DLEU1_2.1-201ENST00000617920 342 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 MIR6861-201ENST00000618657 64 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 U1.31-201ENST00000620022 160 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC022400.9-201ENST00000623633 273 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC009033.1-201ENST00000624279 431 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC116563.2-201ENST00000624751 535 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 CDRT1-208ENST00000630868 794 ntBASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.63□□□□□ -1.51
PTCHD1Q96NR3 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms