Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC093719.1-202ENST00000392735 373 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 ZNF602P-201ENST00000405929 924 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC026782.2-201ENST00000510845 636 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 OR5M7P-201ENST00000526140 972 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 MIR3945-201ENST00000581853 98 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 SNORD91B-202ENST00000608459 222 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC005344.1-201ENST00000613391 459 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 MIR8058-201ENST00000615737 89 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 RNA5SP306-201ENST00000411087 107 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC127537.2-201ENST00000439258 465 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 RPL21P8-201ENST00000465083 535 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 SNORA70.18-201ENST00000516696 98 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 ATE1-AS1-202ENST00000636460 506 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 BX323014.1-201ENST00000412876 237 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AL390879.2-203ENST00000426943 1121 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 RPL23AP25-201ENST00000430973 463 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 FTH1P9-201ENST00000513251 355 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 EIF4BP1-201ENST00000554881 351 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC2.53□□□□□ -2
VPS13DQ5THJ4 MTCO3P22-201ENST00000603219 784 ntBASIC2.53□□□□□ -2
VPS13DQ5THJ4 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13DQ5THJ4 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2.01
VPS13DQ5THJ4 BCORP1-203ENST00000513194 5093 ntBASIC2.53□□□□□ -2.01
VPS13DQ5THJ4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2.01
VPS13DQ5THJ4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 LINC00561-201ENST00000565815 2738 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 GEMIN8P3-201ENST00000445417 720 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 GTF2IP8-201ENST00000560687 584 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 CDY11P-201ENST00000447168 1651 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 AL590609.2-201ENST00000421430 368 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 AJ239321.1-201ENST00000424255 564 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 OR6C71P-201ENST00000432580 913 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 RN7SL807P-201ENST00000470923 297 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 CFL2-206ENST00000556161 546 ntTSL 4 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 AC010591.1-201ENST00000603941 649 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 APOOP2-201ENST00000461561 539 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 DEFB109F-201ENST00000491870 277 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 RNU6-513P-201ENST00000516104 104 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 AC008802.1-201ENST00000519121 791 ntBASIC2.52□□□□□ -2.01
VPS13DQ5THJ4 MESTIT1_2.1-201ENST00000616328 235 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms