Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP39Q53GS9 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
USP39Q53GS9 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USP39Q53GS9 AL360270.2-201ENST00000562952 5985 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP39Q53GS9 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
USP39Q53GS9 AL035419.1-201ENST00000397037 564 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AL109941.1-201ENST00000401925 229 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP39Q53GS9 RNU2-66P-201ENST00000410650 161 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC007899.1-201ENST00000412776 775 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.49□□□□□ -1.53
USP39Q53GS9 CCDC58P2-201ENST00000417131 366 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 RNF10P1-201ENST00000418589 369 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.49□□□□□ -1.53
USP39Q53GS9 SRSF1P1-201ENST00000424058 520 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.49□□□□□ -1.53
USP39Q53GS9 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.49□□□□□ -1.53
USP39Q53GS9 USP9YP29-201ENST00000445112 563 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.49□□□□□ -1.53
USP39Q53GS9 HMGB1P48-201ENST00000446155 598 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 MTND2P24-201ENST00000453434 806 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 HIGD1AP8-201ENST00000453927 274 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 DNAJB5P1-201ENST00000454004 806 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.49□□□□□ -1.53
USP39Q53GS9 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.49□□□□□ -1.53
USP39Q53GS9 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.49□□□□□ -1.53
USP39Q53GS9 MTND6P2-201ENST00000512226 524 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 RPS27AP18-201ENST00000515536 459 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 RNU6-941P-201ENST00000516346 108 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.49□□□□□ -1.53
USP39Q53GS9 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 MTCO3P15-201ENST00000526563 574 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC118273.2-201ENST00000532092 465 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.49□□□□□ -1.53
USP39Q53GS9 HIGD1AP17-201ENST00000554576 276 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.49□□□□□ -1.53
USP39Q53GS9 ROCK1P1-201ENST00000573767 549 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.49□□□□□ -1.53
USP39Q53GS9 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC5.49□□□□□ -1.53
USP39Q53GS9 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC5.49□□□□□ -1.53
USP39Q53GS9 AL592148.2-201ENST00000612210 372 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC109583.2-201ENST00000617367 129 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 RNA5SP439-201ENST00000617595 124 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC007742.2-201ENST00000618226 398 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 AC092794.2-201ENST00000620933 563 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
USP39Q53GS9 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.49□□□□□ -1.53
USP39Q53GS9 LINC01739-205ENST00000641890 573 ntBASIC5.49□□□□□ -1.53
USP39Q53GS9 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
USP39Q53GS9 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.49□□□□□ -1.53
USP39Q53GS9 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.49□□□□□ -1.53
USP39Q53GS9 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP39Q53GS9 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.49□□□□□ -1.53
USP39Q53GS9 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.49□□□□□ -1.53
USP39Q53GS9 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP39Q53GS9 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.48□□□□□ -1.53
USP39Q53GS9 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 AC109446.4-201ENST00000623235 2755 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 Y_RNA.813-201ENST00000364639 102 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
USP39Q53GS9 SNORA75-201ENST00000384158 137 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 SNORD65C-201ENST00000390962 71 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AGR3-202ENST00000402239 563 ntTSL 2 BASIC5.48□□□□□ -1.53
USP39Q53GS9 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 RPS26P13-201ENST00000419030 330 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 DNAJA1P2-201ENST00000421360 1197 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.48□□□□□ -1.53
USP39Q53GS9 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.48□□□□□ -1.53
USP39Q53GS9 AC104651.1-201ENST00000427559 735 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC5.48□□□□□ -1.53
USP39Q53GS9 GSTM5P1-201ENST00000434751 660 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 SNRPEP8-201ENST00000442866 260 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.48□□□□□ -1.53
USP39Q53GS9 Z80107.2-201ENST00000445127 392 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AC023271.1-201ENST00000445936 1090 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AL050341.1-201ENST00000447743 313 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 EPS15P1-201ENST00000448836 336 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 CCRL1P1-201ENST00000449542 1053 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AL672138.1-201ENST00000450604 1015 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 RN7SL197P-201ENST00000466981 299 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 HMGB1P36-201ENST00000487709 576 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 RPS17P5-201ENST00000498293 408 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.48□□□□□ -1.53
USP39Q53GS9 HSPE1P23-201ENST00000509838 286 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.48□□□□□ -1.53
USP39Q53GS9 AC013701.1-201ENST00000522657 465 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms