Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC090151.1-201ENST00000520784 730 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.62□□□□□ -1.83
CHD3Q12873 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.62□□□□□ -1.83
CHD3Q12873 HNRNPCP4-201ENST00000571636 900 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 RN7SL339P-201ENST00000580597 296 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 AC107982.3-201ENST00000584957 985 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 AL160290.3-201ENST00000604869 165 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CHD3Q12873 MIR8059-201ENST00000620427 81 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 AC091953.5-201ENST00000622919 233 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 AC015908.5-201ENST00000623289 343 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.62□□□□□ -1.83
CHD3Q12873 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CHD3Q12873 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CHD3Q12873 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.62□□□□□ -1.83
CHD3Q12873 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
CHD3Q12873 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
CHD3Q12873 ZNF962P-201ENST00000443465 3140 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 AC011503.2-201ENST00000594230 1500 ntBASIC3.62□□□□□ -1.83
CHD3Q12873 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.62□□□□□ -1.83
CHD3Q12873 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 VN1R8P-201ENST00000407739 893 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.61□□□□□ -1.83
CHD3Q12873 RAC1P3-201ENST00000416129 580 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AC108032.1-201ENST00000416706 207 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AC234781.4-201ENST00000419384 244 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 RPS29P7-201ENST00000439662 171 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AL162151.2-201ENST00000448875 158 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 RPL7P24-201ENST00000493052 752 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AP000619.3-201ENST00000535634 1127 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC3.61□□□□□ -1.83
CHD3Q12873 AC099669.2-201ENST00000616549 437 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 MFSD8-242ENST00000641690 4199 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AL450326.2-201ENST00000421913 1962 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 HDGFP1-201ENST00000405943 252 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 CBX1P3-201ENST00000413296 527 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC3.61□□□□□ -1.83
CHD3Q12873 RNA5SP519-201ENST00000516480 119 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.61□□□□□ -1.83
CHD3Q12873 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 AC110743.1-201ENST00000584870 478 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.61□□□□□ -1.83
CHD3Q12873 AL161729.3-201ENST00000603533 673 ntBASIC3.61□□□□□ -1.83
CHD3Q12873 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
CHD3Q12873 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CHD3Q12873 OR11H5P-202ENST00000641612 1325 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
CHD3Q12873 AC093311.1-201ENST00000506586 2021 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
CHD3Q12873 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
CHD3Q12873 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
CHD3Q12873 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CHD3Q12873 USP9YP4-201ENST00000424401 1745 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 MIR7-3-201ENST00000384898 110 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CHD3Q12873 GSTM3P2-201ENST00000412746 530 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.6□□□□□ -1.83
CHD3Q12873 NANOGP6-201ENST00000429190 847 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 COX6B1P7-201ENST00000430845 235 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 RPL7P28-201ENST00000437739 740 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 PSMC1P13-201ENST00000458195 985 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.6□□□□□ -1.83
CHD3Q12873 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.6□□□□□ -1.83
CHD3Q12873 UBTFL9-201ENST00000534504 1148 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 AC069240.1-201ENST00000548774 375 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 AC027176.2-201ENST00000559166 746 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC3.6□□□□□ -1.83
CHD3Q12873 AC007342.8-201ENST00000623278 678 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 AP003499.2-201ENST00000624100 483 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 AC092162.3-201ENST00000624511 1624 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CHD3Q12873 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.6□□□□□ -1.83
CHD3Q12873 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.6□□□□□ -1.83
CHD3Q12873 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CHD3Q12873 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CHD3Q12873 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CHD3Q12873 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CHD3Q12873 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CHD3Q12873 AL590704.1-201ENST00000402856 794 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CHD3Q12873 AL358472.1-201ENST00000431295 329 ntBASIC3.6□□□□□ -1.83
CHD3Q12873 RPL23AP46-201ENST00000438548 490 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms