Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC116553.2-201ENST00000564203 463 ntBASIC4.06□□□□□ -1.76
CDX1P47902 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.06□□□□□ -1.76
CDX1P47902 AC122134.1-202ENST00000569111 1201 ntBASIC4.06□□□□□ -1.76
CDX1P47902 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CDX1P47902 AC067852.4-201ENST00000590314 478 ntBASIC4.06□□□□□ -1.76
CDX1P47902 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.06□□□□□ -1.76
CDX1P47902 AL020997.3-201ENST00000602843 359 ntBASIC4.06□□□□□ -1.76
CDX1P47902 AC087763.1-201ENST00000603391 286 ntBASIC4.06□□□□□ -1.76
CDX1P47902 AC026979.4-201ENST00000606555 645 ntBASIC4.06□□□□□ -1.76
CDX1P47902 AC084824.4-201ENST00000620106 731 ntBASIC4.06□□□□□ -1.76
CDX1P47902 AC073342.3-201ENST00000624211 193 ntBASIC4.06□□□□□ -1.76
CDX1P47902 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CDX1P47902 AL672167.1-205ENST00000641112 3080 ntBASIC4.06□□□□□ -1.76
CDX1P47902 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CDX1P47902 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CDX1P47902 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CDX1P47902 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CDX1P47902 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CDX1P47902 AC017104.4-201ENST00000636283 1592 ntBASIC4.06□□□□□ -1.76
CDX1P47902 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CDX1P47902 AC063976.2-201ENST00000425667 3556 ntBASIC4.06□□□□□ -1.76
CDX1P47902 MAPK10-303ENST00000641324 3959 ntBASIC4.05□□□□□ -1.76
CDX1P47902 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.05□□□□□ -1.76
CDX1P47902 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
CDX1P47902 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.05□□□□□ -1.76
CDX1P47902 ERCC6-202ENST00000374127 1782 ntBASIC4.05□□□□□ -1.76
CDX1P47902 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CDX1P47902 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 AC012020.1-201ENST00000624541 1728 ntBASIC4.05□□□□□ -1.76
CDX1P47902 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 OR9G4-201ENST00000302957 984 ntBASIC4.05□□□□□ -1.76
CDX1P47902 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 ANKRD36P1-201ENST00000344424 659 ntBASIC4.05□□□□□ -1.76
CDX1P47902 RNA5SP90-201ENST00000364801 99 ntBASIC4.05□□□□□ -1.76
CDX1P47902 RNU6-1293P-201ENST00000384077 107 ntBASIC4.05□□□□□ -1.76
CDX1P47902 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CDX1P47902 MIR708-201ENST00000390708 88 ntBASIC4.05□□□□□ -1.76
CDX1P47902 Y_RNA.578-201ENST00000390903 88 ntBASIC4.05□□□□□ -1.76
CDX1P47902 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 CEACAMP8-201ENST00000413902 580 ntBASIC4.05□□□□□ -1.76
CDX1P47902 TMBIM7P-201ENST00000418074 855 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AC013429.2-201ENST00000418798 781 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 USP9YP21-201ENST00000420603 432 ntBASIC4.05□□□□□ -1.76
CDX1P47902 SFR1P2-201ENST00000421841 730 ntBASIC4.05□□□□□ -1.76
CDX1P47902 DDX39BP1-205ENST00000422507 192 ntBASIC4.05□□□□□ -1.76
CDX1P47902 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 NPM1P34-201ENST00000428821 893 ntBASIC4.05□□□□□ -1.76
CDX1P47902 CLUHP1-201ENST00000435012 1190 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.05□□□□□ -1.76
CDX1P47902 YWHAZP8-201ENST00000436935 731 ntBASIC4.05□□□□□ -1.76
CDX1P47902 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.05□□□□□ -1.76
CDX1P47902 RAB11AP1-201ENST00000442978 646 ntBASIC4.05□□□□□ -1.76
CDX1P47902 NPM1P13-201ENST00000452663 865 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.05□□□□□ -1.76
CDX1P47902 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 AC097484.1-201ENST00000471148 389 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.05□□□□□ -1.76
CDX1P47902 VWA8P1-201ENST00000510889 176 ntBASIC4.05□□□□□ -1.76
CDX1P47902 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 RN7SKP260-201ENST00000516907 149 ntBASIC4.05□□□□□ -1.76
CDX1P47902 SOD1P3-201ENST00000518682 454 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.05□□□□□ -1.76
CDX1P47902 AC090819.1-201ENST00000523800 1111 ntBASIC4.05□□□□□ -1.76
CDX1P47902 OR8I1P-201ENST00000529291 931 ntBASIC4.05□□□□□ -1.76
CDX1P47902 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.05□□□□□ -1.76
CDX1P47902 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 AC027455.1-201ENST00000574104 594 ntBASIC4.05□□□□□ -1.76
CDX1P47902 MIR3691-201ENST00000578066 90 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AC096947.1-201ENST00000603233 470 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AC018695.5-201ENST00000605872 315 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AC024933.1-201ENST00000608472 348 ntBASIC4.05□□□□□ -1.76
CDX1P47902 VN1R7P-201ENST00000619242 903 ntBASIC4.05□□□□□ -1.76
CDX1P47902 RNU6-156P-201ENST00000621869 107 ntBASIC4.05□□□□□ -1.76
CDX1P47902 MIR6730-201ENST00000622213 67 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AP000843.1-201ENST00000624880 701 ntBASIC4.05□□□□□ -1.76
CDX1P47902 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
CDX1P47902 LINC01739-205ENST00000641890 573 ntBASIC4.05□□□□□ -1.76
CDX1P47902 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CDX1P47902 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.05□□□□□ -1.76
CDX1P47902 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CDX1P47902 AC107068.1-201ENST00000563286 4218 ntBASIC4.05□□□□□ -1.76
CDX1P47902 THAP12P4-201ENST00000528321 2266 ntBASIC4.05□□□□□ -1.76
CDX1P47902 AC087190.4-201ENST00000574616 8334 ntBASIC4.05□□□□□ -1.76
CDX1P47902 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.05□□□□□ -1.76
CDX1P47902 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.04□□□□□ -1.76
CDX1P47902 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CDX1P47902 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CDX1P47902 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms