Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.38□□□□□ -1.39
CUX1P39880 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CUX1P39880 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CUX1P39880 MIR1251-201ENST00000408552 70 ntBASIC6.38□□□□□ -1.39
CUX1P39880 RN7SKP177-201ENST00000410567 355 ntBASIC6.38□□□□□ -1.39
CUX1P39880 RPL21P110-201ENST00000433345 446 ntBASIC6.38□□□□□ -1.39
CUX1P39880 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC6.38□□□□□ -1.39
CUX1P39880 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC6.38□□□□□ -1.39
CUX1P39880 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC6.38□□□□□ -1.39
CUX1P39880 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.39
CUX1P39880 5S_rRNA.16-201ENST00000612928 119 ntBASIC6.38□□□□□ -1.39
CUX1P39880 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CUX1P39880 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CUX1P39880 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.37□□□□□ -1.39
CUX1P39880 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CUX1P39880 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC6.37□□□□□ -1.39
CUX1P39880 AC097713.2-201ENST00000430199 356 ntBASIC6.37□□□□□ -1.39
CUX1P39880 ARL4AP3-201ENST00000441452 574 ntBASIC6.37□□□□□ -1.39
CUX1P39880 AL591503.2-201ENST00000442314 1005 ntBASIC6.37□□□□□ -1.39
CUX1P39880 AC006511.1-201ENST00000470614 315 ntBASIC6.37□□□□□ -1.39
CUX1P39880 AC084198.1-201ENST00000477747 402 ntBASIC6.37□□□□□ -1.39
CUX1P39880 RN7SL271P-201ENST00000487601 295 ntBASIC6.37□□□□□ -1.39
CUX1P39880 AC008802.1-201ENST00000519121 791 ntBASIC6.37□□□□□ -1.39
CUX1P39880 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CUX1P39880 RPL21P12-201ENST00000559810 515 ntBASIC6.37□□□□□ -1.39
CUX1P39880 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC6.37□□□□□ -1.39
CUX1P39880 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC6.37□□□□□ -1.39
CUX1P39880 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC6.37□□□□□ -1.39
CUX1P39880 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC6.37□□□□□ -1.39
CUX1P39880 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
CUX1P39880 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CUX1P39880 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC6.37□□□□□ -1.39
CUX1P39880 AP001642.1-201ENST00000624727 2117 ntBASIC6.37□□□□□ -1.39
CUX1P39880 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC6.36□□□□□ -1.39
CUX1P39880 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CUX1P39880 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC6.36□□□□□ -1.39
CUX1P39880 DPY19L1P2-201ENST00000426647 915 ntBASIC6.36□□□□□ -1.39
CUX1P39880 AC005326.1-201ENST00000429197 123 ntBASIC6.36□□□□□ -1.39
CUX1P39880 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC6.36□□□□□ -1.39
CUX1P39880 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CUX1P39880 PSMC1P13-201ENST00000458195 985 ntBASIC6.36□□□□□ -1.39
CUX1P39880 SETP6-201ENST00000479329 568 ntBASIC6.36□□□□□ -1.39
CUX1P39880 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC6.36□□□□□ -1.39
CUX1P39880 AP000563.1-201ENST00000490865 758 ntBASIC6.36□□□□□ -1.39
CUX1P39880 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC6.36□□□□□ -1.39
CUX1P39880 RNA5SP164-201ENST00000516533 110 ntBASIC6.36□□□□□ -1.39
CUX1P39880 RANP9-201ENST00000519957 271 ntBASIC6.36□□□□□ -1.39
CUX1P39880 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC6.36□□□□□ -1.39
CUX1P39880 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC6.36□□□□□ -1.39
CUX1P39880 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC6.36□□□□□ -1.39
CUX1P39880 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC6.36□□□□□ -1.39
CUX1P39880 ABBA01000935.2-201ENST00000637477 838 ntBASIC6.36□□□□□ -1.39
CUX1P39880 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CUX1P39880 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CUX1P39880 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC6.36□□□□□ -1.39
CUX1P39880 MUC2-202ENST00000613187 4845 ntBASIC6.36□□□□□ -1.39
CUX1P39880 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
CUX1P39880 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CUX1P39880 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CUX1P39880 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CUX1P39880 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC6.35□□□□□ -1.39
CUX1P39880 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC6.35□□□□□ -1.39
CUX1P39880 RPL23AP12-201ENST00000467573 473 ntBASIC6.35□□□□□ -1.39
CUX1P39880 RPL31P61-201ENST00000496160 376 ntBASIC6.35□□□□□ -1.39
CUX1P39880 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC6.35□□□□□ -1.39
CUX1P39880 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC6.35□□□□□ -1.39
CUX1P39880 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC6.35□□□□□ -1.39
CUX1P39880 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CUX1P39880 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
CUX1P39880 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
CUX1P39880 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CUX1P39880 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC6.35□□□□□ -1.39
CUX1P39880 AP000641.1-201ENST00000531988 1639 ntBASIC6.35□□□□□ -1.39
CUX1P39880 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CUX1P39880 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC6.35□□□□□ -1.39
CUX1P39880 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
CUX1P39880 DDX18P6-201ENST00000450119 1997 ntBASIC6.35□□□□□ -1.39
CUX1P39880 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CUX1P39880 VDAC2P1-201ENST00000399358 958 ntBASIC6.35□□□□□ -1.39
CUX1P39880 BOLA3P4-201ENST00000418151 400 ntBASIC6.35□□□□□ -1.39
CUX1P39880 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC6.35□□□□□ -1.39
CUX1P39880 RBMY2UP-201ENST00000453474 324 ntBASIC6.35□□□□□ -1.39
CUX1P39880 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC6.35□□□□□ -1.39
CUX1P39880 RN7SKP57-201ENST00000517248 293 ntBASIC6.35□□□□□ -1.39
CUX1P39880 OR7E13P-201ENST00000526052 910 ntBASIC6.35□□□□□ -1.39
CUX1P39880 AC068020.1-201ENST00000594215 661 ntBASIC6.35□□□□□ -1.39
CUX1P39880 AL355365.1-201ENST00000616480 294 ntBASIC6.35□□□□□ -1.39
CUX1P39880 AL121839.2-201ENST00000565058 6943 ntBASIC6.34□□□□□ -1.39
CUX1P39880 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CUX1P39880 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
CUX1P39880 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
CUX1P39880 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CUX1P39880 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC6.34□□□□□ -1.39
CUX1P39880 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CUX1P39880 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC6.34□□□□□ -1.39
CUX1P39880 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CUX1P39880 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
CUX1P39880 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC6.34□□□□□ -1.39
CUX1P39880 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC6.34□□□□□ -1.39
CUX1P39880 MIR8058-201ENST00000615737 89 ntBASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms