Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
MSH4O15457 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSH4O15457 AC000123.3-201ENST00000624029 4975 ntBASIC4.54□□□□□ -1.68
MSH4O15457 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
MSH4O15457 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.53□□□□□ -1.68
MSH4O15457 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH4O15457 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
MSH4O15457 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH4O15457 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.53□□□□□ -1.68
MSH4O15457 SNORD65-201ENST00000391079 73 ntBASIC4.53□□□□□ -1.68
MSH4O15457 SNORA57.1-201ENST00000391227 145 ntBASIC4.53□□□□□ -1.68
MSH4O15457 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH4O15457 HMGB3P19-201ENST00000403971 560 ntBASIC4.53□□□□□ -1.68
MSH4O15457 RNU6-628P-201ENST00000410675 107 ntBASIC4.53□□□□□ -1.68
MSH4O15457 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH4O15457 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH4O15457 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH4O15457 OR8F1P-201ENST00000425243 930 ntBASIC4.53□□□□□ -1.68
MSH4O15457 VDAC1P6-201ENST00000430062 855 ntBASIC4.53□□□□□ -1.68
MSH4O15457 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH4O15457 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH4O15457 PTMAP3-201ENST00000447474 330 ntBASIC4.53□□□□□ -1.68
MSH4O15457 AL157884.3-201ENST00000448273 1184 ntBASIC4.53□□□□□ -1.68
MSH4O15457 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH4O15457 RPS4XP15-201ENST00000489210 795 ntBASIC4.53□□□□□ -1.68
MSH4O15457 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH4O15457 AC022968.1-201ENST00000567372 442 ntBASIC4.53□□□□□ -1.68
MSH4O15457 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH4O15457 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.53□□□□□ -1.68
MSH4O15457 AC022387.2-201ENST00000604050 448 ntBASIC4.53□□□□□ -1.68
MSH4O15457 MIR6875-201ENST00000617506 72 ntBASIC4.53□□□□□ -1.68
MSH4O15457 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH4O15457 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH4O15457 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
MSH4O15457 HSPD1P11-201ENST00000508643 1702 ntBASIC4.52□□□□□ -1.69
MSH4O15457 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH4O15457 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
MSH4O15457 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
MSH4O15457 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH4O15457 RNA5SP399-201ENST00000364003 117 ntBASIC4.52□□□□□ -1.69
MSH4O15457 RN7SKP280-201ENST00000364196 304 ntBASIC4.52□□□□□ -1.69
MSH4O15457 RNU4-7P-201ENST00000364758 141 ntBASIC4.52□□□□□ -1.69
MSH4O15457 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
MSH4O15457 RN7SKP247-201ENST00000411094 308 ntBASIC4.52□□□□□ -1.69
MSH4O15457 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.52□□□□□ -1.69
MSH4O15457 FABP3P2-201ENST00000453169 399 ntBASIC4.52□□□□□ -1.69
MSH4O15457 AC104629.2-201ENST00000468627 598 ntBASIC4.52□□□□□ -1.69
MSH4O15457 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
MSH4O15457 RNU6-751P-201ENST00000516382 101 ntBASIC4.52□□□□□ -1.69
MSH4O15457 IGKV2-38-201ENST00000517443 247 ntBASIC4.52□□□□□ -1.69
MSH4O15457 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.52□□□□□ -1.69
MSH4O15457 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.52□□□□□ -1.69
MSH4O15457 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.52□□□□□ -1.69
MSH4O15457 MTATP6P25-201ENST00000574491 261 ntBASIC4.52□□□□□ -1.69
MSH4O15457 AC104662.1-201ENST00000604448 511 ntBASIC4.52□□□□□ -1.69
MSH4O15457 HMGB1P51-201ENST00000605166 638 ntBASIC4.52□□□□□ -1.69
MSH4O15457 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.52□□□□□ -1.69
MSH4O15457 AL356274.1-201ENST00000617064 410 ntBASIC4.52□□□□□ -1.69
MSH4O15457 MIR6500-201ENST00000622700 86 ntBASIC4.52□□□□□ -1.69
MSH4O15457 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH4O15457 AC011266.1-201ENST00000624119 3569 ntBASIC4.52□□□□□ -1.69
MSH4O15457 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
MSH4O15457 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH4O15457 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH4O15457 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
MSH4O15457 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.52□□□□□ -1.69
MSH4O15457 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSH4O15457 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.51□□□□□ -1.69
MSH4O15457 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSH4O15457 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH4O15457 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
MSH4O15457 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH4O15457 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH4O15457 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH4O15457 RNA5SP52-201ENST00000362448 134 ntBASIC4.51□□□□□ -1.69
MSH4O15457 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
MSH4O15457 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH4O15457 AL136131.1-201ENST00000406079 803 ntBASIC4.51□□□□□ -1.69
MSH4O15457 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.51□□□□□ -1.69
MSH4O15457 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.51□□□□□ -1.69
MSH4O15457 MTCO1P54-201ENST00000430139 712 ntBASIC4.51□□□□□ -1.69
MSH4O15457 ARL5AP3-201ENST00000439327 386 ntBASIC4.51□□□□□ -1.69
MSH4O15457 AL589765.3-201ENST00000446084 462 ntBASIC4.51□□□□□ -1.69
MSH4O15457 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 290.3 ms