Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
TRIM49D1C9J1S8 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
TRIM49D1C9J1S8 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.02□□□□□ -1.77
TRIM49D1C9J1S8 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 NCAPGP1-201ENST00000505112 1814 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 RNU6-152P-201ENST00000384037 107 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC104297.1-201ENST00000393779 870 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 RPL5P19-201ENST00000404228 893 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC119751.6-201ENST00000416712 186 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC073136.2-201ENST00000417282 849 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC245028.1-201ENST00000423259 256 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AP000936.3-201ENST00000438127 255 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 RPS4XP4-201ENST00000443195 763 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AL500522.2-201ENST00000448562 343 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC009963.2-201ENST00000453431 138 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AL121839.1-201ENST00000556233 1185 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 SNORD39.2-201ENST00000579995 76 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 MIR4715-201ENST00000584117 79 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC245128.3-201ENST00000594721 748 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC124312.6-202ENST00000623624 418 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC104820.1-201ENST00000624183 307 ntBASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.01□□□□□ -1.77
TRIM49D1C9J1S8 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 RNA5SP447-201ENST00000363749 119 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 RNU6-178P-201ENST00000384631 104 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AL161909.1-201ENST00000397390 712 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AL512430.2-201ENST00000406786 339 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 RPL23AP48-201ENST00000406913 488 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 RNU4-25P-201ENST00000410569 230 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AL807761.1-201ENST00000417622 171 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 GAPDHP49-201ENST00000421421 961 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 RCC2P2-201ENST00000422174 918 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AL500527.1-201ENST00000448532 255 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 FABP3P2-201ENST00000453169 399 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC041039.1-201ENST00000485656 536 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 NARSP2-201ENST00000518524 679 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC023813.4-201ENST00000607580 580 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC009704.2-201ENST00000618739 483 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC015908.5-201ENST00000623289 343 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AL163152.1-201ENST00000642001 374 ntBASIC4□□□□□ -1.77
TRIM49D1C9J1S8 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4□□□□□ -1.77
TRIM49D1C9J1S8 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.99□□□□□ -1.77
TRIM49D1C9J1S8 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
TRIM49D1C9J1S8 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.99□□□□□ -1.77
TRIM49D1C9J1S8 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
TRIM49D1C9J1S8 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
TRIM49D1C9J1S8 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
TRIM49D1C9J1S8 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
TRIM49D1C9J1S8 SNORA60-201ENST00000362396 134 ntBASIC3.99□□□□□ -1.77
TRIM49D1C9J1S8 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms