Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 KSR1P1-201ENST00000446298 240 ntBASIC22.29■■□□□ 1.16
DDX41Q9UJV9 REXO1L10P-201ENST00000615707 1290 ntBASIC22.29■■□□□ 1.16
DDX41Q9UJV9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX41Q9UJV9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 AC018553.1-201ENST00000616682 1458 ntBASIC22.28■■□□□ 1.16
DDX41Q9UJV9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 CR392000.1-201ENST00000624770 1228 ntBASIC22.28■■□□□ 1.16
DDX41Q9UJV9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
DDX41Q9UJV9 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 MMP23A-201ENST00000234610 1017 ntBASIC22.27■■□□□ 1.16
DDX41Q9UJV9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 RBM17P1-201ENST00000453646 1190 ntBASIC22.27■■□□□ 1.16
DDX41Q9UJV9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX41Q9UJV9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.27■■□□□ 1.15
DDX41Q9UJV9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 AC079598.2-202ENST00000546624 1451 ntBASIC22.26■■□□□ 1.15
DDX41Q9UJV9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC22.26■■□□□ 1.15
DDX41Q9UJV9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 AC116562.2-201ENST00000507042 360 ntBASIC22.25■■□□□ 1.15
DDX41Q9UJV9 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX41Q9UJV9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms