Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 NIFKP9-201ENST00000419265 221 ntBASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 KSR1P1-201ENST00000446298 240 ntBASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 AC133561.5-201ENST00000635547 218 ntBASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 PCDHAC2-203ENST00000615316 3011 ntBASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 TUBB8P6-201ENST00000436895 1288 ntBASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 NUDT16P1-203ENST00000513809 620 ntBASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.66■□□□□ 0.58
CLIP3Q96DZ5 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 AC087499.1-201ENST00000418141 1075 ntBASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 KRT16P1-201ENST00000399124 1418 ntBASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.65■□□□□ 0.58
CLIP3Q96DZ5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 GABARAPL3-202ENST00000624044 1851 ntBASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CLIP3Q96DZ5 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLIP3Q96DZ5 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.63■□□□□ 0.57
CLIP3Q96DZ5 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
CLIP3Q96DZ5 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.63■□□□□ 0.57
CLIP3Q96DZ5 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLIP3Q96DZ5 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLIP3Q96DZ5 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CLIP3Q96DZ5 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms