Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 LTB4R2-202ENST00000528054 3092 ntBASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 AC138907.5-202ENST00000569484 235 ntBASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 UBE2DNL-204ENST00000602536 740 ntBASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 AL121832.2-201ENST00000610979 668 ntBASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 MYCNOS-205ENST00000641950 531 ntBASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ZNF540Q8NDQ6 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
ZNF540Q8NDQ6 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 AL355802.2-201ENST00000402069 882 ntBASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 AC007322.3-201ENST00000426526 701 ntBASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 AC010141.2-201ENST00000452426 721 ntBASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 BCL2-203ENST00000589955 5011 ntBASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.9■□□□□ 0.46
ZNF540Q8NDQ6 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
ZNF540Q8NDQ6 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
ZNF540Q8NDQ6 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
ZNF540Q8NDQ6 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms