Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.66■■□□□ 1.06
USP38Q8NB14 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.66■■□□□ 1.06
USP38Q8NB14 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
USP38Q8NB14 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 TFP1-202ENST00000475455 1573 ntBASIC21.65■■□□□ 1.06
USP38Q8NB14 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.65■■□□□ 1.06
USP38Q8NB14 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.65■■□□□ 1.06
USP38Q8NB14 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 AC026271.3-201ENST00000571884 352 ntBASIC21.65■■□□□ 1.06
USP38Q8NB14 AL445675.2-201ENST00000620291 557 ntBASIC21.65■■□□□ 1.06
USP38Q8NB14 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
USP38Q8NB14 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
USP38Q8NB14 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP38Q8NB14 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.65■■□□□ 1.06
USP38Q8NB14 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP38Q8NB14 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
USP38Q8NB14 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP38Q8NB14 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
USP38Q8NB14 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.64■■□□□ 1.06
USP38Q8NB14 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP38Q8NB14 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.64■■□□□ 1.06
USP38Q8NB14 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.64■■□□□ 1.05
USP38Q8NB14 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP38Q8NB14 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.64■■□□□ 1.05
USP38Q8NB14 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.64■■□□□ 1.05
USP38Q8NB14 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.64■■□□□ 1.05
USP38Q8NB14 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.64■■□□□ 1.05
USP38Q8NB14 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.64■■□□□ 1.05
USP38Q8NB14 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP38Q8NB14 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
USP38Q8NB14 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP38Q8NB14 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.64■■□□□ 1.05
USP38Q8NB14 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP38Q8NB14 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.64■■□□□ 1.05
USP38Q8NB14 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.64■■□□□ 1.05
USP38Q8NB14 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
USP38Q8NB14 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.63■■□□□ 1.05
USP38Q8NB14 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.63■■□□□ 1.05
USP38Q8NB14 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
USP38Q8NB14 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
USP38Q8NB14 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.63■■□□□ 1.05
USP38Q8NB14 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.63■■□□□ 1.05
USP38Q8NB14 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
USP38Q8NB14 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.63■■□□□ 1.05
USP38Q8NB14 FSCN1P1-201ENST00000568912 1481 ntBASIC21.63■■□□□ 1.05
USP38Q8NB14 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
USP38Q8NB14 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP38Q8NB14 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.62■■□□□ 1.05
USP38Q8NB14 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.62■■□□□ 1.05
USP38Q8NB14 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.62■■□□□ 1.05
USP38Q8NB14 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.62■■□□□ 1.05
USP38Q8NB14 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
USP38Q8NB14 AC092720.2-201ENST00000602388 1665 ntBASIC21.62■■□□□ 1.05
USP38Q8NB14 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP38Q8NB14 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP38Q8NB14 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.61■■□□□ 1.05
USP38Q8NB14 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP38Q8NB14 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.61■■□□□ 1.05
USP38Q8NB14 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP38Q8NB14 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.61■■□□□ 1.05
USP38Q8NB14 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.61■■□□□ 1.05
USP38Q8NB14 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.61■■□□□ 1.05
USP38Q8NB14 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP38Q8NB14 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.61■■□□□ 1.05
USP38Q8NB14 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.61■■□□□ 1.05
USP38Q8NB14 KRT18P16-201ENST00000510337 1294 ntBASIC21.61■■□□□ 1.05
USP38Q8NB14 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.61■■□□□ 1.05
USP38Q8NB14 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
USP38Q8NB14 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP38Q8NB14 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP38Q8NB14 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP38Q8NB14 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms