Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 RPS2P4-201ENST00000476944 856 ntBASIC19.9■□□□□ 0.78
RTL3Q8N8U3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 Z99916.2-201ENST00000604037 246 ntBASIC19.9■□□□□ 0.78
RTL3Q8N8U3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RTL3Q8N8U3 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
RTL3Q8N8U3 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 LINC01465-201ENST00000408887 1940 ntBASIC19.89■□□□□ 0.77
RTL3Q8N8U3 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.89■□□□□ 0.77
RTL3Q8N8U3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.89■□□□□ 0.77
RTL3Q8N8U3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 MIR718-201ENST00000390190 70 ntBASIC19.88■□□□□ 0.77
RTL3Q8N8U3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 AL160286.2-201ENST00000567150 934 ntBASIC19.88■□□□□ 0.77
RTL3Q8N8U3 AC093484.2-201ENST00000580996 2166 ntBASIC19.88■□□□□ 0.77
RTL3Q8N8U3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RTL3Q8N8U3 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 KRT16P1-201ENST00000399124 1418 ntBASIC19.87■□□□□ 0.77
RTL3Q8N8U3 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 AP001412.1-201ENST00000608405 714 ntBASIC19.87■□□□□ 0.77
RTL3Q8N8U3 AL049637.2-201ENST00000641778 930 ntBASIC19.87■□□□□ 0.77
RTL3Q8N8U3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.87■□□□□ 0.77
RTL3Q8N8U3 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms