Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 C1QBPP2-201ENST00000528754 825 ntBASIC17.14■□□□□ 0.33
SKA3Q8IX90 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 AC124016.1-201ENST00000609552 612 ntBASIC17.14■□□□□ 0.33
SKA3Q8IX90 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.14■□□□□ 0.33
SKA3Q8IX90 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
SKA3Q8IX90 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.13■□□□□ 0.33
SKA3Q8IX90 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.13■□□□□ 0.33
SKA3Q8IX90 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.13■□□□□ 0.33
SKA3Q8IX90 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SKA3Q8IX90 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 KRT18P16-201ENST00000510337 1294 ntBASIC17.13■□□□□ 0.33
SKA3Q8IX90 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SKA3Q8IX90 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.13■□□□□ 0.33
SKA3Q8IX90 AC018445.3-201ENST00000624177 1945 ntBASIC17.13■□□□□ 0.33
SKA3Q8IX90 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.13■□□□□ 0.33
SKA3Q8IX90 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SKA3Q8IX90 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 PRORSD1P-201ENST00000295112 541 ntBASIC17.12■□□□□ 0.33
SKA3Q8IX90 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 TUBB8P6-201ENST00000436895 1288 ntBASIC17.12■□□□□ 0.33
SKA3Q8IX90 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 AC133681.1-201ENST00000465482 601 ntBASIC17.12■□□□□ 0.33
SKA3Q8IX90 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 RPPH1-201ENST00000516869 333 ntBASIC17.12■□□□□ 0.33
SKA3Q8IX90 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SKA3Q8IX90 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.12■□□□□ 0.33
SKA3Q8IX90 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SKA3Q8IX90 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SKA3Q8IX90 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SKA3Q8IX90 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SKA3Q8IX90 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 AC004264.1-201ENST00000608354 794 ntBASIC17.11■□□□□ 0.33
SKA3Q8IX90 AC110285.5-201ENST00000611501 352 ntBASIC17.11■□□□□ 0.33
SKA3Q8IX90 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SKA3Q8IX90 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SKA3Q8IX90 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SKA3Q8IX90 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.11■□□□□ 0.33
SKA3Q8IX90 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms