Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC26.38■■□□□ 1.81
NPHP3Q7Z494 AC006538.3-201ENST00000612495 578 ntBASIC26.38■■□□□ 1.81
NPHP3Q7Z494 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC26.38■■□□□ 1.81
NPHP3Q7Z494 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC26.38■■□□□ 1.81
NPHP3Q7Z494 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 CD37-204ENST00000535669 1674 ntTSL 2 BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 AP002383.4-201ENST00000442518 975 ntBASIC26.37■■□□□ 1.81
NPHP3Q7Z494 BX276092.5-203ENST00000456199 560 ntBASIC26.37■■□□□ 1.81
NPHP3Q7Z494 AC092597.1-201ENST00000487352 616 ntBASIC26.37■■□□□ 1.81
NPHP3Q7Z494 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 AC011498.5-201ENST00000592027 486 ntBASIC26.37■■□□□ 1.81
NPHP3Q7Z494 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC26.37■■□□□ 1.81
NPHP3Q7Z494 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 AP001271.2-201ENST00000624018 1556 ntBASIC26.36■■□□□ 1.81
NPHP3Q7Z494 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 AC034232.1-201ENST00000506026 1064 ntBASIC26.36■■□□□ 1.81
NPHP3Q7Z494 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 AC004263.2-201ENST00000617183 678 ntBASIC26.36■■□□□ 1.81
NPHP3Q7Z494 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
NPHP3Q7Z494 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 NUS1P1-201ENST00000446295 882 ntBASIC26.35■■□□□ 1.81
NPHP3Q7Z494 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 TBCB-205ENST00000585746 875 ntTSL 3 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC26.35■■□□□ 1.81
NPHP3Q7Z494 BX119927.1-201ENST00000636596 1552 ntBASIC26.35■■□□□ 1.81
NPHP3Q7Z494 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 IFNL4P1-201ENST00000607083 540 ntBASIC26.34■■□□□ 1.81
NPHP3Q7Z494 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
NPHP3Q7Z494 AC079834.2-201ENST00000609776 1949 ntBASIC26.34■■□□□ 1.81
NPHP3Q7Z494 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 BUB3-202ENST00000368859 667 ntTSL 3 BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 AC009078.2-202ENST00000463353 338 ntBASIC26.33■■□□□ 1.81
NPHP3Q7Z494 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP3Q7Z494 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
NPHP3Q7Z494 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
NPHP3Q7Z494 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 SMG8-203ENST00000578922 2178 ntBASIC26.32■■□□□ 1.8
NPHP3Q7Z494 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC26.32■■□□□ 1.8
NPHP3Q7Z494 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms