Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13CQ709C8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13CQ709C8 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 AC131212.4-201ENST00000623606 975 ntBASIC16.2■□□□□ 0.18
VPS13CQ709C8 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS13CQ709C8 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.2■□□□□ 0.18
VPS13CQ709C8 RNA5SP419-201ENST00000515908 135 ntBASIC16.2■□□□□ 0.18
VPS13CQ709C8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS13CQ709C8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 AC121338.2-201ENST00000622535 1744 ntBASIC16.19■□□□□ 0.18
VPS13CQ709C8 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
VPS13CQ709C8 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS13CQ709C8 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 AC112907.2-201ENST00000448639 330 ntBASIC16.18■□□□□ 0.18
VPS13CQ709C8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 AC139530.3-201ENST00000620344 690 ntBASIC16.18■□□□□ 0.18
VPS13CQ709C8 AL031432.5-201ENST00000641059 760 ntBASIC16.18■□□□□ 0.18
VPS13CQ709C8 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 TMEM179-206ENST00000616017 1645 ntBASIC16.18■□□□□ 0.18
VPS13CQ709C8 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 AL049796.1-201ENST00000565336 1766 ntBASIC16.18■□□□□ 0.18
VPS13CQ709C8 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VPS13CQ709C8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS13CQ709C8 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 AL512408.1-201ENST00000569378 2000 ntBASIC16.17■□□□□ 0.18
VPS13CQ709C8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VPS13CQ709C8 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS13CQ709C8 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS13CQ709C8 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.17■□□□□ 0.18
VPS13CQ709C8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.17■□□□□ 0.18
VPS13CQ709C8 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS13CQ709C8 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.17■□□□□ 0.18
VPS13CQ709C8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.17■□□□□ 0.18
VPS13CQ709C8 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VPS13CQ709C8 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.17■□□□□ 0.18
VPS13CQ709C8 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VPS13CQ709C8 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 AC092597.1-201ENST00000487352 616 ntBASIC16.16■□□□□ 0.18
VPS13CQ709C8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS13CQ709C8 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms