Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 AC073195.1-201ENST00000607241 877 ntBASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 AC009237.14-201ENST00000609975 1594 ntBASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.21■□□□□ 0.83
RFWD3Q6PCD5 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 AL353708.3-201ENST00000610272 989 ntBASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFWD3Q6PCD5 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 NIFKP9-201ENST00000419265 221 ntBASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 CR392000.1-201ENST00000624770 1228 ntBASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.19■□□□□ 0.82
RFWD3Q6PCD5 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 TSPY15P-201ENST00000457163 923 ntBASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFWD3Q6PCD5 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms