Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC26.92■■□□□ 1.9
MSH6P52701 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC26.91■■□□□ 1.9
MSH6P52701 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
MSH6P52701 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 GAD2-202ENST00000376248 680 ntTSL 5 BASIC26.91■■□□□ 1.9
MSH6P52701 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC26.91■■□□□ 1.9
MSH6P52701 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC26.91■■□□□ 1.9
MSH6P52701 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC26.91■■□□□ 1.9
MSH6P52701 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC26.91■■□□□ 1.9
MSH6P52701 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC26.91■■□□□ 1.9
MSH6P52701 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC26.91■■□□□ 1.9
MSH6P52701 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
MSH6P52701 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC26.9■■□□□ 1.9
MSH6P52701 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
MSH6P52701 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
MSH6P52701 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC26.9■■□□□ 1.9
MSH6P52701 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC26.9■■□□□ 1.9
MSH6P52701 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
MSH6P52701 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
MSH6P52701 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
MSH6P52701 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
MSH6P52701 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
MSH6P52701 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC26.9■■□□□ 1.9
MSH6P52701 NME1-207ENST00000480143 964 ntTSL 2 BASIC26.9■■□□□ 1.9
MSH6P52701 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC26.9■■□□□ 1.9
MSH6P52701 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC26.9■■□□□ 1.9
MSH6P52701 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC26.9■■□□□ 1.9
MSH6P52701 AL671883.3-201ENST00000603274 991 ntBASIC26.9■■□□□ 1.9
MSH6P52701 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC26.9■■□□□ 1.9
MSH6P52701 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
MSH6P52701 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
MSH6P52701 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC26.9■■□□□ 1.9
MSH6P52701 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC26.89■■□□□ 1.9
MSH6P52701 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
MSH6P52701 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
MSH6P52701 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.89■■□□□ 1.9
MSH6P52701 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
MSH6P52701 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC26.89■■□□□ 1.9
MSH6P52701 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
MSH6P52701 AP002469.2-201ENST00000531724 424 ntBASIC26.89■■□□□ 1.9
MSH6P52701 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
MSH6P52701 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC26.89■■□□□ 1.9
MSH6P52701 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
MSH6P52701 Z98882.1-201ENST00000622160 2253 ntBASIC26.89■■□□□ 1.89
MSH6P52701 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
MSH6P52701 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC26.89■■□□□ 1.89
MSH6P52701 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC26.88■■□□□ 1.89
MSH6P52701 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 ILF2-202ENST00000368681 726 ntTSL 2 BASIC26.88■■□□□ 1.89
MSH6P52701 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC26.88■■□□□ 1.89
MSH6P52701 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC26.88■■□□□ 1.89
MSH6P52701 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
MSH6P52701 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
MSH6P52701 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC26.88■■□□□ 1.89
MSH6P52701 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC26.88■■□□□ 1.89
MSH6P52701 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC26.88■■□□□ 1.89
MSH6P52701 LINC01465-201ENST00000408887 1940 ntBASIC26.88■■□□□ 1.89
MSH6P52701 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
MSH6P52701 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
MSH6P52701 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
MSH6P52701 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC26.87■■□□□ 1.89
MSH6P52701 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
MSH6P52701 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
MSH6P52701 KRT8P26-201ENST00000534154 1276 ntBASIC26.87■■□□□ 1.89
MSH6P52701 MIR4674-201ENST00000582457 87 ntBASIC26.87■■□□□ 1.89
MSH6P52701 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC26.87■■□□□ 1.89
MSH6P52701 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
MSH6P52701 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
MSH6P52701 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC26.87■■□□□ 1.89
MSH6P52701 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
MSH6P52701 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
MSH6P52701 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms