Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.98■□□□□ 0.79
COL9A1P20849 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.98■□□□□ 0.79
COL9A1P20849 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL9A1P20849 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.98■□□□□ 0.79
COL9A1P20849 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.98■□□□□ 0.79
COL9A1P20849 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.98■□□□□ 0.79
COL9A1P20849 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.98■□□□□ 0.79
COL9A1P20849 AL121912.1-201ENST00000603683 238 ntBASIC19.98■□□□□ 0.79
COL9A1P20849 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
COL9A1P20849 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
COL9A1P20849 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL9A1P20849 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL9A1P20849 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
COL9A1P20849 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL9A1P20849 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.97■□□□□ 0.79
COL9A1P20849 AC026310.3-201ENST00000625186 2373 ntBASIC19.97■□□□□ 0.79
COL9A1P20849 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL9A1P20849 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.97■□□□□ 0.79
COL9A1P20849 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.97■□□□□ 0.79
COL9A1P20849 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.97■□□□□ 0.79
COL9A1P20849 TERC-201ENST00000602385 541 ntBASIC19.97■□□□□ 0.79
COL9A1P20849 AC055717.3-201ENST00000622967 595 ntBASIC19.97■□□□□ 0.79
COL9A1P20849 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL9A1P20849 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL9A1P20849 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL9A1P20849 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.97■□□□□ 0.79
COL9A1P20849 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.97■□□□□ 0.79
COL9A1P20849 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.97■□□□□ 0.79
COL9A1P20849 AC007225.1-201ENST00000566331 1836 ntBASIC19.97■□□□□ 0.79
COL9A1P20849 AP006587.1-201ENST00000534129 1502 ntBASIC19.97■□□□□ 0.79
COL9A1P20849 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.96■□□□□ 0.79
COL9A1P20849 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.96■□□□□ 0.79
COL9A1P20849 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.96■□□□□ 0.79
COL9A1P20849 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.96■□□□□ 0.79
COL9A1P20849 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.96■□□□□ 0.79
COL9A1P20849 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.96■□□□□ 0.79
COL9A1P20849 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL9A1P20849 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.96■□□□□ 0.79
COL9A1P20849 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.96■□□□□ 0.79
COL9A1P20849 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.96■□□□□ 0.79
COL9A1P20849 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.96■□□□□ 0.79
COL9A1P20849 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.96■□□□□ 0.79
COL9A1P20849 C1QL1P1-201ENST00000568105 661 ntBASIC19.96■□□□□ 0.79
COL9A1P20849 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.96■□□□□ 0.79
COL9A1P20849 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.96■□□□□ 0.79
COL9A1P20849 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL9A1P20849 AC116351.2-201ENST00000606540 1585 ntBASIC19.95■□□□□ 0.78
COL9A1P20849 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.95■□□□□ 0.78
COL9A1P20849 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.95■□□□□ 0.78
COL9A1P20849 AC092338.2-201ENST00000568827 1415 ntBASIC19.95■□□□□ 0.78
COL9A1P20849 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.95■□□□□ 0.78
COL9A1P20849 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.95■□□□□ 0.78
COL9A1P20849 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.95■□□□□ 0.78
COL9A1P20849 PGAM5P1-201ENST00000518923 814 ntBASIC19.95■□□□□ 0.78
COL9A1P20849 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.95■□□□□ 0.78
COL9A1P20849 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.95■□□□□ 0.78
COL9A1P20849 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.95■□□□□ 0.78
COL9A1P20849 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL9A1P20849 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL9A1P20849 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL9A1P20849 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
COL9A1P20849 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.94■□□□□ 0.78
COL9A1P20849 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL9A1P20849 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL9A1P20849 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.94■□□□□ 0.78
COL9A1P20849 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL9A1P20849 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.94■□□□□ 0.78
COL9A1P20849 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL9A1P20849 AP000692.2-201ENST00000608391 879 ntBASIC19.94■□□□□ 0.78
COL9A1P20849 TFP1-202ENST00000475455 1573 ntBASIC19.94■□□□□ 0.78
COL9A1P20849 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL9A1P20849 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL9A1P20849 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.94■□□□□ 0.78
COL9A1P20849 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.94■□□□□ 0.78
COL9A1P20849 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL9A1P20849 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 LINC00565-201ENST00000562710 2331 ntBASIC19.93■□□□□ 0.78
COL9A1P20849 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.93■□□□□ 0.78
COL9A1P20849 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.93■□□□□ 0.78
COL9A1P20849 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms