Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A3P12111 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A3P12111 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A3P12111 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.33■□□□□ 0.84
COL6A3P12111 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
COL6A3P12111 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A3P12111 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.32■□□□□ 0.84
COL6A3P12111 AC027601.4-201ENST00000611259 610 ntBASIC20.32■□□□□ 0.84
COL6A3P12111 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
COL6A3P12111 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
COL6A3P12111 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 PUDP-206ENST00000540122 825 ntTSL 2 BASIC20.32■□□□□ 0.84
COL6A3P12111 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL6A3P12111 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.32■□□□□ 0.84
COL6A3P12111 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.32■□□□□ 0.84
COL6A3P12111 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A3P12111 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.31■□□□□ 0.84
COL6A3P12111 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A3P12111 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A3P12111 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.31■□□□□ 0.84
COL6A3P12111 TFP1-202ENST00000475455 1573 ntBASIC20.31■□□□□ 0.84
COL6A3P12111 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.31■□□□□ 0.84
COL6A3P12111 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A3P12111 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A3P12111 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A3P12111 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A3P12111 KRT8P20-201ENST00000423953 1409 ntBASIC20.31■□□□□ 0.84
COL6A3P12111 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A3P12111 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC20.31■□□□□ 0.84
COL6A3P12111 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL6A3P12111 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A3P12111 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.31■□□□□ 0.84
COL6A3P12111 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.31■□□□□ 0.84
COL6A3P12111 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.3■□□□□ 0.84
COL6A3P12111 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.3■□□□□ 0.84
COL6A3P12111 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
COL6A3P12111 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.3■□□□□ 0.84
COL6A3P12111 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.3■□□□□ 0.84
COL6A3P12111 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.3■□□□□ 0.84
COL6A3P12111 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.3■□□□□ 0.84
COL6A3P12111 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.3■□□□□ 0.84
COL6A3P12111 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL6A3P12111 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A3P12111 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
COL6A3P12111 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.3■□□□□ 0.84
COL6A3P12111 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.3■□□□□ 0.84
COL6A3P12111 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.3■□□□□ 0.84
COL6A3P12111 AP005901.3-202ENST00000581653 237 ntBASIC20.3■□□□□ 0.84
COL6A3P12111 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A3P12111 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A3P12111 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A3P12111 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.29■□□□□ 0.84
COL6A3P12111 SPCS2P1-201ENST00000561636 679 ntBASIC20.29■□□□□ 0.84
COL6A3P12111 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.29■□□□□ 0.84
COL6A3P12111 C1orf229-201ENST00000623686 2258 ntBASIC20.29■□□□□ 0.84
COL6A3P12111 AC242852.2-201ENST00000615738 1807 ntBASIC20.29■□□□□ 0.84
COL6A3P12111 AC092364.2-202ENST00000597012 1073 ntBASIC20.29■□□□□ 0.84
COL6A3P12111 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL6A3P12111 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.29■□□□□ 0.84
COL6A3P12111 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A3P12111 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A3P12111 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
COL6A3P12111 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COL6A3P12111 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
COL6A3P12111 AC018712.1-201ENST00000455767 687 ntBASIC20.28■□□□□ 0.84
COL6A3P12111 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.28■□□□□ 0.84
COL6A3P12111 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.28■□□□□ 0.84
COL6A3P12111 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
COL6A3P12111 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.28■□□□□ 0.84
COL6A3P12111 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COL6A3P12111 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.28■□□□□ 0.84
COL6A3P12111 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms