Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 PRELID1P1-202ENST00000567272 903 ntBASIC17.56■□□□□ 0.4
SPTA1P02549 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SPTA1P02549 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.56■□□□□ 0.4
SPTA1P02549 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SPTA1P02549 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.55■□□□□ 0.4
SPTA1P02549 SPDYE13P-201ENST00000445314 798 ntBASIC17.55■□□□□ 0.4
SPTA1P02549 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SPTA1P02549 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.55■□□□□ 0.4
SPTA1P02549 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.55■□□□□ 0.4
SPTA1P02549 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.55■□□□□ 0.4
SPTA1P02549 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.55■□□□□ 0.4
SPTA1P02549 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SPTA1P02549 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 LINC01465-201ENST00000408887 1940 ntBASIC17.55■□□□□ 0.4
SPTA1P02549 HTR7P1-202ENST00000624664 4411 ntBASIC17.55■□□□□ 0.4
SPTA1P02549 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.55■□□□□ 0.4
SPTA1P02549 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SPTA1P02549 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.55■□□□□ 0.4
SPTA1P02549 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 AL662844.1-201ENST00000546340 181 ntBASIC17.55■□□□□ 0.4
SPTA1P02549 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SPTA1P02549 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SPTA1P02549 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 AC233723.2-201ENST00000623798 2106 ntBASIC17.54■□□□□ 0.4
SPTA1P02549 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SPTA1P02549 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SPTA1P02549 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.54■□□□□ 0.4
SPTA1P02549 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
SPTA1P02549 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SPTA1P02549 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SPTA1P02549 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.54■□□□□ 0.4
SPTA1P02549 KRT8P41-201ENST00000533985 1514 ntBASIC17.53■□□□□ 0.4
SPTA1P02549 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
SPTA1P02549 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SPTA1P02549 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.53■□□□□ 0.4
SPTA1P02549 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SPTA1P02549 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.53■□□□□ 0.4
SPTA1P02549 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
SPTA1P02549 AC106795.1-205ENST00000512851 1056 ntBASIC17.53■□□□□ 0.4
SPTA1P02549 AC011498.5-201ENST00000592027 486 ntBASIC17.53■□□□□ 0.4
SPTA1P02549 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 GUSBP5-202ENST00000510805 1989 ntBASIC17.53■□□□□ 0.4
SPTA1P02549 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.53■□□□□ 0.4
SPTA1P02549 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SPTA1P02549 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.53■□□□□ 0.4
SPTA1P02549 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SPTA1P02549 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SPTA1P02549 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SPTA1P02549 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.52■□□□□ 0.4
SPTA1P02549 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.52■□□□□ 0.4
SPTA1P02549 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
SPTA1P02549 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SPTA1P02549 FBXW4P1-201ENST00000426721 2239 ntBASIC17.52■□□□□ 0.4
SPTA1P02549 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SPTA1P02549 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SPTA1P02549 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SPTA1P02549 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms