Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 RNU1-83P-201ENST00000363426 164 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 RNU6-468P-201ENST00000384003 109 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AL807761.1-201ENST00000417622 171 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC241520.1-201ENST00000422654 1099 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 RPS26P47-201ENST00000427219 348 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC068287.1-201ENST00000430283 295 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 MTND6P18-201ENST00000439477 513 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 RPL23AP93-201ENST00000440847 484 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 HMGB3P9-201ENST00000441799 583 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AL009048.1-201ENST00000450437 298 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AL935212.3-201ENST00000450729 284 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 snoU13.1-201ENST00000459157 104 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 DYNLL1P4-201ENST00000549314 266 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 MTATP6P24-201ENST00000576835 677 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 RN7SL176P-201ENST00000580352 264 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC006946.3-201ENST00000609791 756 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC019193.2-201ENST00000610012 634 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AL109659.3-201ENST00000624985 950 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AC108751.5-201ENST00000492880 1336 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 AL592148.3-201ENST00000608771 2646 ntBASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SNX9Q9Y5X1 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 AL451142.2-201ENST00000429076 2090 ntBASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.9□□□□□ -1.62
SNX9Q9Y5X1 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 MIR659-201ENST00000384963 97 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 MIR129-1-201ENST00000384972 72 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 RPL6P29-201ENST00000414863 865 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 DNAJC19P7-201ENST00000428811 344 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 HMGB3P5-201ENST00000428894 612 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 CNOT7P1-201ENST00000429006 852 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 MTCO1P43-201ENST00000431831 488 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 RPS7P2-201ENST00000435134 607 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 H2AFZP6-201ENST00000444403 394 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC098826.2-201ENST00000452011 651 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 MTND2P28-201ENST00000457540 1044 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 RPL5P13-201ENST00000462840 709 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 RPL21P47-201ENST00000483696 477 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC010374.1-201ENST00000503762 1237 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 Y_RNA.717-201ENST00000517106 92 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC021451.1-201ENST00000523498 1129 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC087894.1-201ENST00000538359 518 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC084783.1-201ENST00000565846 910 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC015912.2-201ENST00000571053 181 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AP005119.2-201ENST00000579735 1105 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 MIR4715-201ENST00000584117 79 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 RPL12P25-202ENST00000598100 674 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 VN1R9P-201ENST00000614184 867 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 AC097655.1-201ENST00000635075 318 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 NEAT1-202ENST00000501122 22743 ntBASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SNX9Q9Y5X1 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.89□□□□□ -1.63
SNX9Q9Y5X1 VN2R3P-201ENST00000422626 1412 ntBASIC4.89□□□□□ -1.63
SNX9Q9Y5X1 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SNX9Q9Y5X1 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SNX9Q9Y5X1 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.89□□□□□ -1.63
SNX9Q9Y5X1 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SNX9Q9Y5X1 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SNX9Q9Y5X1 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms