Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS4AQ9UN37 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4AQ9UN37 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5□□□□□ -1.61
VPS4AQ9UN37 IGKV7-3-201ENST00000357453 298 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC5□□□□□ -1.61
VPS4AQ9UN37 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4AQ9UN37 MIR589-201ENST00000385238 99 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 RNA5SP339-201ENST00000390987 122 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC5□□□□□ -1.61
VPS4AQ9UN37 RSL24D1P4-201ENST00000400938 484 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 SFR1P1-201ENST00000403720 688 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 OR4K12P-201ENST00000406538 961 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AC009518.2-201ENST00000418056 731 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC093655.2-201ENST00000425735 631 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC234064.1-201ENST00000436312 247 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5□□□□□ -1.61
VPS4AQ9UN37 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5□□□□□ -1.61
VPS4AQ9UN37 CYCSP24-201ENST00000445119 316 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5□□□□□ -1.61
VPS4AQ9UN37 ATG12P2-201ENST00000456830 416 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC021660.1-201ENST00000465006 554 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 RPS3AP22-201ENST00000488297 769 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC5□□□□□ -1.61
VPS4AQ9UN37 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5□□□□□ -1.61
VPS4AQ9UN37 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5□□□□□ -1.61
VPS4AQ9UN37 OR11J2P-201ENST00000555298 907 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS4AQ9UN37 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC5□□□□□ -1.61
VPS4AQ9UN37 DPRXP5-201ENST00000604662 539 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC011626.1-201ENST00000604710 562 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC090525.3-201ENST00000605601 189 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AP003392.5-201ENST00000607857 415 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AP000238.1-201ENST00000608759 426 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC099676.1-201ENST00000608886 657 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AL392048.1-201ENST00000613946 534 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5□□□□□ -1.61
VPS4AQ9UN37 AP001005.3-201ENST00000622049 129 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC067852.7-201ENST00000623270 535 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 AC087821.2-201ENST00000637086 450 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5□□□□□ -1.61
VPS4AQ9UN37 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
VPS4AQ9UN37 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
VPS4AQ9UN37 DDX18P4-201ENST00000511690 1966 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AP000542.2-201ENST00000623199 6179 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 FAM133CP-201ENST00000332869 704 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RNU6-707P-201ENST00000364647 95 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RNU1-149P-201ENST00000390870 161 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AL133388.1-201ENST00000404509 287 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RPS4XP9-201ENST00000405151 780 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 SNORA11C-201ENST00000408532 129 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 MFSD13B-201ENST00000420133 1290 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AC104837.2-201ENST00000427236 424 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 CNOT7P1-201ENST00000429006 852 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 FGF7P5-201ENST00000441829 291 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AL589765.3-201ENST00000446084 462 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 NOP56P2-201ENST00000447491 769 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RPS3AP41-201ENST00000462701 778 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RN7SL189P-201ENST00000468631 289 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AC011979.1-201ENST00000472300 483 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RPL21P6-201ENST00000479171 504 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AC073522.1-201ENST00000483312 377 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AC084024.2-201ENST00000503480 791 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 MRPS33P3-201ENST00000513456 322 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RNU6-416P-201ENST00000516265 103 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 RN7SKP147-201ENST00000517154 244 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AP000926.4-201ENST00000527351 454 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 MTND2P26-201ENST00000528255 1029 ntBASIC4.99□□□□□ -1.61
VPS4AQ9UN37 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS4AQ9UN37 PDCL2P2-201ENST00000533651 189 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms